Class org.broadinstitute.hellbender.tools.sv.PrintSVEvidenceIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testBafUniquenessCriterion | 0.001s | passed |
| testBafViolateUniquenessCriterion | 0s | passed |
| testCorrectFeatureTypes | 0.112s | passed |
| testDepthUniquenessCriterion | 0.001s | passed |
| testDepthViolateUniquenessCriterion | 0.001s | passed |
| testIncorrectFeatureTypes | 0.094s | passed |
| testPrintSplitReads[0](print read pairs zipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.pe.txt.gz, .pe.txt, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.pe.txt.gz) | 0.101s | passed |
| testPrintSplitReads[1](print read pairs unzipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.pe.txt.gz, .pe.txt, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.pe.txt) | 0.104s | passed |
| testPrintSplitReads[2](print split reads zipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.sr.txt.gz, .sr.txt.gz, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.sr.txt.gz) | 0.118s | passed |
| testPrintSplitReads[3](print baf zipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.baf.txt.gz, .baf.txt.gz, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.baf.txt.gz) | 0.110s | passed |
| testPrintSplitReads[4](print rd zipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.rd.txt.gz, .rd.txt.gz, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.rd.txt.gz) | 0.121s | passed |
| testPrintSplitReads[5](print rd unzipped, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/test_hg38.rd.txt.gz, .rd.txt, chr22:30500000-30550001, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/sv/printevidence/output.test_hg38.rd.txt) | 0.112s | passed |
| testSiteDepthUniquenessCriterion | 0s | passed |
| testSiteDepthViolateUniquenessCriterion | 0.001s | passed |
| testSplitReadUniquenessCriterion | 0s | passed |
| testSplitReadViolateUniquenessCriterion | 0.002s | passed |
Standard output
-------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:matching input and output types -------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:mismatched input and output types -------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:print read pairs zipped -------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:print read pairs unzipped -------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:print split reads zipped -------------------------------------------------------------------------------- [14:37:01] Executing test PrintSVEvidenceIntegrationTest:print baf zipped -------------------------------------------------------------------------------- [14:37:02] Executing test PrintSVEvidenceIntegrationTest:print rd zipped -------------------------------------------------------------------------------- [14:37:02] Executing test PrintSVEvidenceIntegrationTest:print rd unzipped
Standard error
[June 2, 2025 at 2:37:01 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:01 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:01 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:01 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:01 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:02 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:02 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424 [June 2, 2025 at 2:37:02 PM GMT] org.broadinstitute.hellbender.tools.sv.PrintSVEvidence done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=654311424