Class org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariatesIntegrationTest
Tests
| Test |
Duration |
Result |
| testCsvGeneration |
0.356s |
passed |
| testInGatkLiteDocker |
0.088s |
passed |
| testInOutAbsenceException[0](true, false, false, false, false) |
0.075s |
passed |
| testParameterChangeException[0](after-noDp.table.gz, Unset the default platform) |
0.215s |
passed |
| testParameterChangeException[1](after-mcs4.table.gz, Changed -mcs parameter from 2 to 4) |
0.250s |
passed |
Standard output
--------------------------------------------------------------------------------
[14:38:29] Executing test AnalyzeCovariatesIntegrationTest:testCsvGeneration
--------------------------------------------------------------------------------
[14:38:29] Executing test AnalyzeCovariatesIntegrationTest:testInGatkLiteDocker
--------------------------------------------------------------------------------
[14:38:29] Executing test AnalyzeCovariatesIntegrationTest:testInOutAbsencePresenceException
--------------------------------------------------------------------------------
[14:38:29] Executing test AnalyzeCovariatesIntegrationTest:testParameterChangeException - Unset the default platform
--------------------------------------------------------------------------------
[14:38:29] Executing test AnalyzeCovariatesIntegrationTest:testParameterChangeException - Changed -mcs parameter from 2 to 4
Standard error
[June 2, 2025 at 2:38:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1327497216
[June 2, 2025 at 2:38:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1327497216
[June 2, 2025 at 2:38:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1327497216
[June 2, 2025 at 2:38:29 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1327497216
[June 2, 2025 at 2:38:30 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1327497216