Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.437s |
passed |
| testOnRealBam[0](1) |
17.862s |
passed |
| testOnRealBam[1](5) |
18.391s |
passed |
| testTwoSamples |
0.300s |
passed |
Standard error
[June 2, 2025 at 2:43:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:40 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:43:58 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600