Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.276s |
passed |
| testASEReadCounterImproperPairs |
3.066s |
passed |
| testASEReadCounterMinDepth70 |
0.202s |
passed |
| testASEReadCounterMultipleContexts |
0.137s |
passed |
| testASEReadCounterNonRefAllele |
0.142s |
passed |
| testASEReadCounterWarnings |
0.203s |
passed |
| testASEReadCounterWithCountOverlaps |
0.198s |
passed |
| testASEReadCounterWithCountReads |
0.193s |
passed |
| testASEReadCounterWithHighMQ |
0.199s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.197s |
passed |
| testASEReadCounterWithLowMQ |
0.199s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.204s |
passed |
Standard output
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[14:44:01] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[14:44:01] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[14:44:04] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:05] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:05] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:05] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:05] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:06] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:44:06] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[June 2, 2025 at 2:44:01 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:04 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:04 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:04 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1677721600