Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
14.356s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 7.894s passed
testCompareReadStrands[1](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, CDS, true) 2.054s passed
testConsistentWithPast[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.837s passed
testConsistentWithPast[1](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.838s passed
testConsistentWithPast[2](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.826s passed
testConsistentWithPast[3](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.795s passed
testConsistentWithPast[4](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.265s passed
testConsistentWithPast[5](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.346s passed
testConsistentWithPast[6](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.263s passed
testConsistentWithPast[7](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.238s passed

Standard error

[June 2, 2025 at 2:44:07 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:08 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1677721600
[June 2, 2025 at 2:44:09 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2116026368
[June 2, 2025 at 2:44:10 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2116026368
[June 2, 2025 at 2:44:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2594177024
[June 2, 2025 at 2:44:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2852126720
[June 2, 2025 at 2:44:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3107979264
[June 2, 2025 at 2:44:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3273654272
[June 2, 2025 at 2:44:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:18 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:19 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:19 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[June 2, 2025 at 2:44:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2982150144
[June 2, 2025 at 2:44:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2982150144
[June 2, 2025 at 2:44:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2982150144