Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.621s |
passed |
| testSplitsFixNDN |
0.114s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.540s |
passed |
| testSplitsTargetRegionFunctionality |
0.232s |
passed |
| testSplitsWithOverhangs |
0.449s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.343s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.332s |
passed |
| testSplitsWithOverhangsNotClipping |
0.298s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.318s |
passed |
Standard output
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[14:44:32] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[14:44:32] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:44:34] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:44:34] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[14:44:34] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[14:44:35] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[14:44:35] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[14:44:35] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[June 2, 2025 at 2:44:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:33 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:34 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:34 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:44:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000