Class org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTableIntegrationTest
Tests
| Test |
Duration |
Result |
| testComplexVariantsToTable |
0.097s |
passed |
| testComplexVariantsToTableFail |
0.094s |
passed |
| testGenotypeFields |
0.105s |
passed |
| testGenotypeFieldsWithInline |
0.113s |
passed |
| testInputFileFail |
0.082s |
passed |
| testListFields |
0.087s |
passed |
| testMoltenOutput |
0.084s |
passed |
| testMoltenOutputWithGenotypeFields |
0.088s |
passed |
| testMoltenOutputWithMultipleAlleles |
0.093s |
passed |
| testMultiAllelicOneRecord |
0.084s |
passed |
| testMultiAllelicSplitRecords |
0.087s |
passed |
| testMultiallelicGenotypeFields |
0.087s |
passed |
| testNoFieldsSpecifiedFormatFieldInHeaderNoSamples |
0.086s |
passed |
| testNoFieldsSpecifiedNoSamples |
0.090s |
passed |
| testNoFieldsSpecifiedWithSamples |
0.082s |
passed |
| testNoSamples |
0.096s |
passed |
| testNoSamplesSoNoGenotypes |
0.086s |
passed |
| testOutputFileFail |
0.089s |
passed |
| testSplitMultiallelicFields |
0.294s |
passed |
| testUnfilteredGenotypeFields |
0.090s |
passed |
| testUnfilteredGenotypeFieldsFail |
0.086s |
passed |
Standard output
--------------------------------------------------------------------------------
[14:46:40] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable
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[14:46:41] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
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[14:46:41] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMoltenOutput
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithGenotypeFields
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithMultipleAlleles
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMultiAllelicOneRecord
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMultiAllelicSplitRecords
--------------------------------------------------------------------------------
[14:46:41] Executing test VariantsToTableIntegrationTest:testMultiallelicGenotypeFields
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields
--------------------------------------------------------------------------------
[14:46:42] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields-FAIL
Standard error
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[June 2, 2025 at 2:46:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000