Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
4.553s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.009s	passed
testGetCompatibleHeader	0.015s	passed
testGetConflictingHeader	0.009s	passed
testIteratorOverlapping	0.013s	passed
testNoDictionaryForAllInputs	0.010s	passed
testNoDictionaryForOneInput	0.010s	passed
testNoDictionaryForOnlyInput	0.007s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.008s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.008s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.009s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.008s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.011s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.010s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test5235b060-0690-4dfe-ad50-32bccaa3d8a2dir/remote_bundle.json, 1, 14)	2.382s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testd6d81366-c25c-406b-93bc-381475787fa9dir/remote_bundle.json, 2:200-600, 3)	2.024s	passed
Standard error

14:09:00.883 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.883 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.883 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.883 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.883 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.883 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.884 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.884 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.884 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.884 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.884 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.884 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.884 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.884 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.884 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.884 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.884 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.886 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:09:00.887 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.892 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.892 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.892 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.892 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.892 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.893 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.893 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.893 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.893 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.893 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.893 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.893 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.893 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.893 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.893 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.893 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.893 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.895 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:00.896 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:09:00.900 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.900 INFO  ProgressMeter - Starting traversal
14:09:00.900 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.902 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
14:09:00.903 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:09:00.903 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.908 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.908 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.908 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.909 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.909 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.909 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.909 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.909 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.909 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.909 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.909 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.909 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.909 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.909 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.909 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.910 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.910 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.910 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:09:00.912 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
14:09:00.913 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.918 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:09:00.918 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.918 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.918 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.918 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.918 INFO  TestMultiVariantWalkerIterator - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.918 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:09:00.918 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:09:00.919 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.919 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.919 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.919 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.919 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
14:09:00.919 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
14:09:00.919 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
14:09:00.919 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
14:09:00.919 INFO  TestMultiVariantWalkerIterator - Initializing engine
14:09:00.921 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
14:09:00.923 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
14:09:00.925 INFO  TestMultiVariantWalkerIterator - Done initializing engine
14:09:00.925 INFO  ProgressMeter - Starting traversal
14:09:00.925 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.926 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
14:09:00.926 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
14:09:00.926 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.931 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.931 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.931 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.931 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.931 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.931 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.931 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.931 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.932 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.932 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.932 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.932 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.932 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.932 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.932 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.932 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.932 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.933 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:09:00.935 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:09:00.936 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:09:00.936 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:09:00.937 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.942 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.942 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.942 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.942 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.942 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.942 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.942 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.942 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.943 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.943 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.943 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.943 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.943 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.944 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:00.945 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:09:00.946 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:09:00.946 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.947 INFO  ProgressMeter - Starting traversal
14:09:00.947 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.948 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:09:00.948 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:09:00.948 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.953 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.953 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.953 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.953 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.953 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.953 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.953 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.953 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.953 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.954 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.954 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.954 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.954 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.954 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.954 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.954 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.954 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.955 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:09:00.955 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:09:00.955 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.956 INFO  ProgressMeter - Starting traversal
14:09:00.956 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.956 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
14:09:00.956 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:09:00.956 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.961 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.961 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.962 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.962 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.962 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.962 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.962 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.962 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.962 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.962 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.962 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.962 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.962 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.963 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.963 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.963 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.963 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.963 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:09:00.964 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.964 INFO  ProgressMeter - Starting traversal
14:09:00.964 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.965 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:09:00.965 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:09:00.965 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.970 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.970 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.970 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.970 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.970 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.970 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.970 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.970 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.970 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.971 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.971 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.971 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.971 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.971 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.971 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.971 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.971 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.972 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:00.973 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.973 INFO  ProgressMeter - Starting traversal
14:09:00.973 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.973 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
14:09:00.974 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:09:00.974 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.979 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.979 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.979 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.979 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.979 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.979 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.979 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.979 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.979 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.979 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.979 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.979 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.980 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.980 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.980 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.980 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.980 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.981 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:00.982 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:09:00.983 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.983 INFO  ProgressMeter - Starting traversal
14:09:00.983 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.984 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:09:00.984 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:09:00.984 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:00.989 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.989 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:00.989 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:00.989 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:00.989 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:00.989 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:00.989 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.989 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:00.989 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:00.990 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:00.990 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:00.990 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:00.990 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:00.990 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:00.990 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:00.990 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:00.990 INFO  TestMultiVariantWalker - Initializing engine
14:09:00.991 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
14:09:00.992 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
14:09:00.994 INFO  TestMultiVariantWalker - Done initializing engine
14:09:00.994 INFO  ProgressMeter - Starting traversal
14:09:00.994 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:00.995 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:09:00.995 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:09:00.995 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:00 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:01.000 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.000 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:01.000 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:01.000 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:01.000 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:01.000 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:00 PM UTC
14:09:01.000 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.000 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:01.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:01.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:01.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:01.001 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:01.001 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:01.001 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:01.001 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:01.001 INFO  TestMultiVariantWalker - Initializing engine
14:09:01.002 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:09:01.003 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:09:01.004 INFO  TestMultiVariantWalker - Done initializing engine
14:09:01.004 INFO  ProgressMeter - Starting traversal
14:09:01.004 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:01.005 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
14:09:01.005 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:09:01.005 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:01 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:01.009 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.010 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:01.010 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:01.010 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:01.010 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:01.010 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:01 PM UTC
14:09:01.010 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.010 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.010 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:01.010 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:01.010 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:01.010 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:01.010 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:01.010 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:01.010 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:01.011 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:01.011 INFO  TestMultiVariantWalker - Initializing engine
14:09:01.011 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:01.012 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:09:01.012 INFO  TestMultiVariantWalker - Done initializing engine
14:09:01.013 INFO  ProgressMeter - Starting traversal
14:09:01.013 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:01.013 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
14:09:01.013 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
14:09:01.013 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:01 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:01.018 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.019 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:01.019 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:01.019 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:01.019 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:01.019 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:01 PM UTC
14:09:01.019 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.019 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.019 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:01.019 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:01.019 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:01.019 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:01.019 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:01.019 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:01.019 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:01.020 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:01.020 INFO  TestMultiVariantWalker - Initializing engine
14:09:01.021 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:01.022 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:09:01.023 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:09:01.023 INFO  TestMultiVariantWalker - Done initializing engine
14:09:01.023 INFO  ProgressMeter - Starting traversal
14:09:01.023 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:01.024 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:09:01.024 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:09:01.024 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:01 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:01.029 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.029 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:01.029 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:01.030 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:01.030 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:01.030 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:01 PM UTC
14:09:01.030 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.030 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:01.030 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:01.030 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:01.030 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:01.030 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:01.030 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:01.030 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:01.030 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:01.030 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:01.030 INFO  TestMultiVariantWalker - Initializing engine
14:09:01.031 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:09:01.032 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:09:01.034 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:09:01.034 INFO  TestMultiVariantWalker - Done initializing engine
14:09:01.034 INFO  ProgressMeter - Starting traversal
14:09:01.034 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:01.035 INFO  ProgressMeter -             unmapped              0.0                     3         180000.0
14:09:01.035 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:09:01.035 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:01 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1845493760
14:09:03.665 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:03.665 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:03.665 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:03.665 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:03.665 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:03.665 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:03 PM UTC
14:09:03.665 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:03.665 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:03.666 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:03.666 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:03.666 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:03.666 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:03.666 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:03.666 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:03.666 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:03.666 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:03.666 INFO  TestMultiVariantWalker - Initializing engine
14:09:04.700 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test5235b060-0690-4dfe-ad50-32bccaa3d8a2dir/interleavedVariants_1.vcf
14:09:05.535 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test5235b060-0690-4dfe-ad50-32bccaa3d8a2dir/interleavedVariants_2.vcf
14:09:05.930 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:09:05.930 INFO  TestMultiVariantWalker - Done initializing engine
14:09:05.930 INFO  ProgressMeter - Starting traversal
14:09:05.930 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:06.040 INFO  ProgressMeter -             unmapped              0.0                    14           7636.4
14:09:06.040 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:09:06.040 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:06 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1845493760
14:09:06.048 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:06.048 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
14:09:06.048 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:09:06.048 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:09:06.048 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:09:06.049 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:09:06 PM UTC
14:09:06.049 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:06.049 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:09:06.049 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:09:06.049 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:09:06.049 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:09:06.049 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:09:06.049 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:09:06.049 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:09:06.049 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:09:06.049 INFO  TestMultiVariantWalker - Requester pays: disabled
14:09:06.049 INFO  TestMultiVariantWalker - Initializing engine
14:09:06.692 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testd6d81366-c25c-406b-93bc-381475787fa9dir/interleavedVariants_1.vcf
14:09:07.404 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testd6d81366-c25c-406b-93bc-381475787fa9dir/interleavedVariants_2.vcf
14:09:07.870 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:09:07.870 INFO  TestMultiVariantWalker - Done initializing engine
14:09:07.871 INFO  ProgressMeter - Starting traversal
14:09:07.871 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:09:08.064 INFO  ProgressMeter -             unmapped              0.0                     3            937.5
14:09:08.064 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:09:08.064 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:09:08 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1845493760