Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
5.064s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 0.916s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.647s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.637s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.592s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.591s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.591s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.472s passed
testPRFailWithLowMaxCycle 0.159s passed
testPRNoFailWithHighMaxCycle 0.459s passed

Standard output

--------------------------------------------------------------------------------
[14:18:59] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[14:18:59] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[June 2, 2025 at 2:18:56 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:56 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:57 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:58 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:58 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:59 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:59 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:18:59 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3462397952
[June 2, 2025 at 2:19:00 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3462397952