[June 2, 2025 at 2:22:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680
[June 2, 2025 at 2:22:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680
[June 2, 2025 at 2:22:41 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680
14:22:41.198 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.198 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:22:41.198 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:41.198 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:22:41.198 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:22:41.198 INFO CollectMultipleMetricsSpark - Start Date/Time: June 2, 2025 at 2:22:41 PM UTC
14:22:41.198 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.198 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.198 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:41.198 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:41.198 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:41.198 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:41.198 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:22:41.198 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:22:41.198 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:22:41.198 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:22:41.198 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:22:41.198 INFO CollectMultipleMetricsSpark - Initializing engine
14:22:41.198 INFO CollectMultipleMetricsSpark - Done initializing engine
14:22:41.198 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
WARNING 2025-06-02 14:22:41 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-06-02 14:22:41 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
14:22:41.200 INFO MemoryStore - Block broadcast_3408 stored as values in memory (estimated size 37.8 KiB, free 1909.6 MiB)
14:22:41.200 INFO MemoryStore - Block broadcast_3408_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1909.5 MiB)
14:22:41.201 INFO BlockManagerInfo - Added broadcast_3408_piece0 in memory on localhost:39377 (size: 8.4 KiB, free: 1917.4 MiB)
14:22:41.201 INFO SparkContext - Created broadcast 3408 from broadcast at SamSource.java:78
14:22:41.201 INFO MemoryStore - Block broadcast_3409 stored as values in memory (estimated size 306.3 KiB, free 1909.2 MiB)
14:22:41.208 INFO MemoryStore - Block broadcast_3409_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1909.2 MiB)
14:22:41.208 INFO BlockManagerInfo - Added broadcast_3409_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1917.3 MiB)
14:22:41.208 INFO SparkContext - Created broadcast 3409 from newAPIHadoopFile at SamSource.java:108
WARNING 2025-06-02 14:22:41 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-06-02 14:22:41 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
14:22:41.211 INFO MemoryStore - Block broadcast_3410 stored as values in memory (estimated size 37.8 KiB, free 1909.1 MiB)
14:22:41.211 INFO MemoryStore - Block broadcast_3410_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1909.1 MiB)
14:22:41.211 INFO BlockManagerInfo - Added broadcast_3410_piece0 in memory on localhost:39377 (size: 8.4 KiB, free: 1917.3 MiB)
14:22:41.211 INFO SparkContext - Created broadcast 3410 from broadcast at SamSource.java:78
14:22:41.212 INFO MemoryStore - Block broadcast_3411 stored as values in memory (estimated size 306.3 KiB, free 1908.8 MiB)
14:22:41.219 INFO MemoryStore - Block broadcast_3411_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1908.8 MiB)
14:22:41.219 INFO BlockManagerInfo - Added broadcast_3411_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1917.3 MiB)
14:22:41.219 INFO SparkContext - Created broadcast 3411 from newAPIHadoopFile at SamSource.java:108
14:22:41.221 INFO FileInputFormat - Total input files to process : 1
14:22:41.224 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:22:41.225 INFO DAGScheduler - Got job 892 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:22:41.225 INFO DAGScheduler - Final stage: ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:22:41.225 INFO DAGScheduler - Parents of final stage: List()
14:22:41.225 INFO DAGScheduler - Missing parents: List()
14:22:41.225 INFO DAGScheduler - Submitting ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:22:41.225 INFO MemoryStore - Block broadcast_3412 stored as values in memory (estimated size 34.8 KiB, free 1908.7 MiB)
14:22:41.226 INFO MemoryStore - Block broadcast_3412_piece0 stored as bytes in memory (estimated size 14.6 KiB, free 1908.7 MiB)
14:22:41.226 INFO BlockManagerInfo - Added broadcast_3412_piece0 in memory on localhost:39377 (size: 14.6 KiB, free: 1917.2 MiB)
14:22:41.226 INFO SparkContext - Created broadcast 3412 from broadcast at DAGScheduler.scala:1580
14:22:41.226 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:22:41.226 INFO TaskSchedulerImpl - Adding task set 2485.0 with 1 tasks resource profile 0
14:22:41.227 INFO TaskSetManager - Starting task 0.0 in stage 2485.0 (TID 1916) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
14:22:41.227 INFO Executor - Running task 0.0 in stage 2485.0 (TID 1916)
14:22:41.228 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.sam:0+44008
14:22:41.229 INFO Executor - Finished task 0.0 in stage 2485.0 (TID 1916). 946 bytes result sent to driver
14:22:41.229 INFO TaskSetManager - Finished task 0.0 in stage 2485.0 (TID 1916) in 3 ms on localhost (executor driver) (1/1)
14:22:41.229 INFO TaskSchedulerImpl - Removed TaskSet 2485.0, whose tasks have all completed, from pool
14:22:41.230 INFO DAGScheduler - ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.004 s
14:22:41.230 INFO DAGScheduler - Job 892 is finished. Cancelling potential speculative or zombie tasks for this job
14:22:41.230 INFO TaskSchedulerImpl - Killing all running tasks in stage 2485: Stage finished
14:22:41.230 INFO DAGScheduler - Job 892 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.005209 s
14:22:41.230 INFO CollectMultipleMetricsSpark - Shutting down engine
[June 2, 2025 at 2:22:41 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680
14:22:41.234 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.234 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:22:41.234 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:41.234 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:22:41.235 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:22:41.235 INFO CollectMultipleMetricsSpark - Start Date/Time: June 2, 2025 at 2:22:41 PM UTC
14:22:41.235 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.235 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.235 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:41.235 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:41.235 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:41.235 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:41.235 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:22:41.235 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:22:41.235 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:22:41.235 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:22:41.235 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:22:41.235 INFO CollectMultipleMetricsSpark - Initializing engine
14:22:41.235 INFO CollectMultipleMetricsSpark - Done initializing engine
14:22:41.235 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
14:22:41.236 INFO MemoryStore - Block broadcast_3413 stored as values in memory (estimated size 306.3 KiB, free 1908.4 MiB)
14:22:41.243 INFO MemoryStore - Block broadcast_3413_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1908.4 MiB)
14:22:41.243 INFO BlockManagerInfo - Added broadcast_3413_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1917.2 MiB)
14:22:41.243 INFO SparkContext - Created broadcast 3413 from newAPIHadoopFile at PathSplitSource.java:96
14:22:41.263 INFO MemoryStore - Block broadcast_3414 stored as values in memory (estimated size 306.3 KiB, free 1908.1 MiB)
14:22:41.270 INFO MemoryStore - Block broadcast_3414_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1908.0 MiB)
14:22:41.270 INFO BlockManagerInfo - Added broadcast_3414_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1917.1 MiB)
14:22:41.270 INFO SparkContext - Created broadcast 3414 from newAPIHadoopFile at PathSplitSource.java:96
14:22:41.289 INFO FileInputFormat - Total input files to process : 1
14:22:41.292 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:22:41.293 INFO DAGScheduler - Got job 893 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:22:41.293 INFO DAGScheduler - Final stage: ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:22:41.293 INFO DAGScheduler - Parents of final stage: List()
14:22:41.293 INFO DAGScheduler - Missing parents: List()
14:22:41.293 INFO DAGScheduler - Submitting ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:22:41.310 INFO MemoryStore - Block broadcast_3415 stored as values in memory (estimated size 478.0 KiB, free 1907.5 MiB)
14:22:41.313 INFO MemoryStore - Block broadcast_3415_piece0 stored as bytes in memory (estimated size 208.0 KiB, free 1907.3 MiB)
14:22:41.313 INFO BlockManagerInfo - Added broadcast_3415_piece0 in memory on localhost:39377 (size: 208.0 KiB, free: 1916.9 MiB)
14:22:41.313 INFO SparkContext - Created broadcast 3415 from broadcast at DAGScheduler.scala:1580
14:22:41.313 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:22:41.313 INFO TaskSchedulerImpl - Adding task set 2486.0 with 1 tasks resource profile 0
14:22:41.314 INFO TaskSetManager - Starting task 0.0 in stage 2486.0 (TID 1917) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
14:22:41.314 INFO Executor - Running task 0.0 in stage 2486.0 (TID 1917)
14:22:41.345 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.bam:0+8071
14:22:41.348 INFO Executor - Finished task 0.0 in stage 2486.0 (TID 1917). 989 bytes result sent to driver
14:22:41.349 INFO TaskSetManager - Finished task 0.0 in stage 2486.0 (TID 1917) in 36 ms on localhost (executor driver) (1/1)
14:22:41.349 INFO TaskSchedulerImpl - Removed TaskSet 2486.0, whose tasks have all completed, from pool
14:22:41.349 INFO DAGScheduler - ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.056 s
14:22:41.349 INFO DAGScheduler - Job 893 is finished. Cancelling potential speculative or zombie tasks for this job
14:22:41.349 INFO TaskSchedulerImpl - Killing all running tasks in stage 2486: Stage finished
14:22:41.349 INFO DAGScheduler - Job 893 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.056426 s
14:22:41.349 INFO CollectMultipleMetricsSpark - Shutting down engine
[June 2, 2025 at 2:22:41 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680
14:22:41.354 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.354 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
14:22:41.354 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:41.354 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
14:22:41.354 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:22:41.354 INFO CollectMultipleMetricsSpark - Start Date/Time: June 2, 2025 at 2:22:41 PM UTC
14:22:41.354 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.354 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
14:22:41.354 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:41.354 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:41.354 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:41.354 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:41.354 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
14:22:41.354 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
14:22:41.354 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
14:22:41.354 INFO CollectMultipleMetricsSpark - Requester pays: disabled
14:22:41.354 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
14:22:41.354 INFO CollectMultipleMetricsSpark - Initializing engine
14:22:41.354 INFO CollectMultipleMetricsSpark - Done initializing engine
14:22:41.354 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
14:22:41.356 INFO MemoryStore - Block broadcast_3416 stored as values in memory (estimated size 600.0 B, free 1907.3 MiB)
14:22:41.357 INFO MemoryStore - Block broadcast_3416_piece0 stored as bytes in memory (estimated size 211.0 B, free 1907.3 MiB)
14:22:41.357 INFO BlockManagerInfo - Added broadcast_3416_piece0 in memory on localhost:39377 (size: 211.0 B, free: 1916.9 MiB)
14:22:41.357 INFO SparkContext - Created broadcast 3416 from broadcast at CramSource.java:114
14:22:41.358 INFO MemoryStore - Block broadcast_3417 stored as values in memory (estimated size 306.3 KiB, free 1907.0 MiB)
14:22:41.364 INFO MemoryStore - Block broadcast_3417_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1907.0 MiB)
14:22:41.364 INFO BlockManagerInfo - Added broadcast_3417_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1916.9 MiB)
14:22:41.365 INFO SparkContext - Created broadcast 3417 from newAPIHadoopFile at PathSplitSource.java:96
14:22:41.379 INFO MemoryStore - Block broadcast_3418 stored as values in memory (estimated size 600.0 B, free 1907.0 MiB)
14:22:41.379 INFO MemoryStore - Block broadcast_3418_piece0 stored as bytes in memory (estimated size 211.0 B, free 1907.0 MiB)
14:22:41.380 INFO BlockManagerInfo - Added broadcast_3418_piece0 in memory on localhost:39377 (size: 211.0 B, free: 1916.9 MiB)
14:22:41.380 INFO SparkContext - Created broadcast 3418 from broadcast at CramSource.java:114
14:22:41.380 INFO MemoryStore - Block broadcast_3419 stored as values in memory (estimated size 306.3 KiB, free 1906.7 MiB)
14:22:41.387 INFO MemoryStore - Block broadcast_3419_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1906.6 MiB)
14:22:41.388 INFO BlockManagerInfo - Added broadcast_3419_piece0 in memory on localhost:39377 (size: 64.4 KiB, free: 1916.8 MiB)
14:22:41.388 INFO SparkContext - Created broadcast 3419 from newAPIHadoopFile at PathSplitSource.java:96
14:22:41.402 INFO FileInputFormat - Total input files to process : 1
14:22:41.405 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
14:22:41.405 INFO DAGScheduler - Got job 894 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
14:22:41.405 INFO DAGScheduler - Final stage: ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
14:22:41.405 INFO DAGScheduler - Parents of final stage: List()
14:22:41.405 INFO DAGScheduler - Missing parents: List()
14:22:41.405 INFO DAGScheduler - Submitting ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
14:22:41.417 INFO MemoryStore - Block broadcast_3420 stored as values in memory (estimated size 330.5 KiB, free 1906.3 MiB)
14:22:41.419 INFO MemoryStore - Block broadcast_3420_piece0 stored as bytes in memory (estimated size 143.8 KiB, free 1906.1 MiB)
14:22:41.419 INFO BlockManagerInfo - Added broadcast_3420_piece0 in memory on localhost:39377 (size: 143.8 KiB, free: 1916.7 MiB)
14:22:41.420 INFO SparkContext - Created broadcast 3420 from broadcast at DAGScheduler.scala:1580
14:22:41.420 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
14:22:41.420 INFO TaskSchedulerImpl - Adding task set 2487.0 with 1 tasks resource profile 0
14:22:41.420 INFO TaskSetManager - Starting task 0.0 in stage 2487.0 (TID 1918) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9773 bytes)
14:22:41.420 INFO Executor - Running task 0.0 in stage 2487.0 (TID 1918)
14:22:41.442 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.cram:0+8617
14:22:41.447 INFO Executor - Finished task 0.0 in stage 2487.0 (TID 1918). 989 bytes result sent to driver
14:22:41.447 INFO TaskSetManager - Finished task 0.0 in stage 2487.0 (TID 1918) in 27 ms on localhost (executor driver) (1/1)
14:22:41.447 INFO TaskSchedulerImpl - Removed TaskSet 2487.0, whose tasks have all completed, from pool
14:22:41.447 INFO DAGScheduler - ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.041 s
14:22:41.447 INFO DAGScheduler - Job 894 is finished. Cancelling potential speculative or zombie tasks for this job
14:22:41.447 INFO TaskSchedulerImpl - Killing all running tasks in stage 2487: Stage finished
14:22:41.447 INFO DAGScheduler - Job 894 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.042198 s
14:22:41.447 INFO CollectMultipleMetricsSpark - Shutting down engine
[June 2, 2025 at 2:22:41 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2285895680