Class org.broadinstitute.hellbender.tools.spark.sv.integration.FindBreakpointEvidenceSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.sv.integration > FindBreakpointEvidenceSparkIntegrationTest
2

tests
0

failures
0

ignored
7.420s

duration
100%

successful

Tests

Test Duration Result
testFindBreakpointRunnableLocal[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/home/runner/work/gatk/gatk/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew1159294990993179662', bam-coverage='10.0'}) 2.697s passed
testFindBreakpointRunnableMiniCluster[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/home/runner/work/gatk/gatk/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew3063806894600147763', bam-coverage='10.0'}) 4.723s passed

Standard error

[June 2, 2025 at 2:22:58 PM UTC] org.broadinstitute.hellbender.tools.spark.sv.evidence.FindBreakpointEvidenceSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=2732589056
[June 2, 2025 at 2:23:02 PM UTC] org.broadinstitute.hellbender.tools.spark.sv.evidence.FindBreakpointEvidenceSpark done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=2524971008
14:23:02.979 ERROR DataNode - Command processor encountered interrupt and exit.