Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.readorientation > LearnReadOrientationModelIntegrationTest
4

tests
0

failures
0

ignored
41.710s

duration
100%

successful

Tests

Test Duration Result
testFewSites 1.440s passed
testOnRealBam[0](1) 19.733s passed
testOnRealBam[1](5) 20.242s passed
testTwoSamples 0.295s passed

Standard error

[June 2, 2025 at 2:29:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.30 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:28 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:28 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:29 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.30 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536