Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.263s |
passed |
| testASEReadCounterImproperPairs |
3.139s |
passed |
| testASEReadCounterMinDepth70 |
0.200s |
passed |
| testASEReadCounterMultipleContexts |
0.132s |
passed |
| testASEReadCounterNonRefAllele |
0.129s |
passed |
| testASEReadCounterWarnings |
0.213s |
passed |
| testASEReadCounterWithCountOverlaps |
0.196s |
passed |
| testASEReadCounterWithCountReads |
0.196s |
passed |
| testASEReadCounterWithHighMQ |
0.196s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.213s |
passed |
| testASEReadCounterWithLowMQ |
0.194s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.204s |
passed |
Standard output
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[14:29:50] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[14:29:50] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[14:29:53] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:54] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:54] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:54] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:55] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:55] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[14:29:55] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[June 2, 2025 at 2:29:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536
[June 2, 2025 at 2:29:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1663041536