Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
14.692s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 8.096s passed
testCompareReadStrands[1](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, CDS, true) 1.866s passed
testConsistentWithPast[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.791s passed
testConsistentWithPast[1](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.890s passed
testConsistentWithPast[2](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 1.022s passed
testConsistentWithPast[3](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.877s passed
testConsistentWithPast[4](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.389s passed
testConsistentWithPast[5](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.231s passed
testConsistentWithPast[6](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.231s passed
testConsistentWithPast[7](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.299s passed

Standard error

[June 2, 2025 at 2:29:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1751121920
[June 2, 2025 at 2:29:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1751121920
[June 2, 2025 at 2:29:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2197815296
[June 2, 2025 at 2:29:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2627731456
[June 2, 2025 at 2:30:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2627731456
[June 2, 2025 at 2:30:01 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2627731456
[June 2, 2025 at 2:30:02 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3045064704
[June 2, 2025 at 2:30:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3294625792
[June 2, 2025 at 2:30:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3294625792
[June 2, 2025 at 2:30:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3294625792
[June 2, 2025 at 2:30:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3294625792
[June 2, 2025 at 2:30:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3294625792
[June 2, 2025 at 2:30:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3294625792