Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.659s |
passed |
| testSplitsFixNDN |
0.085s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.266s |
passed |
| testSplitsTargetRegionFunctionality |
0.200s |
passed |
| testSplitsWithOverhangs |
0.470s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.345s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.370s |
passed |
| testSplitsWithOverhangsNotClipping |
0.357s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.377s |
passed |
Standard output
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[14:30:22] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[14:30:22] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:30:23] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[14:30:23] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[14:30:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[14:30:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[14:30:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[14:30:25] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[June 2, 2025 at 2:30:22 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:22 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:30:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=742391808