Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.825s |
passed |
| testApplySNPRecalibration |
1.856s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.084s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.126s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.084s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.069s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.070s |
passed |
Standard output
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[14:32:45] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[14:32:46] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[14:32:48] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
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[14:32:48] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
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[14:32:48] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[14:32:48] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[June 2, 2025 at 2:32:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 2, 2025 at 2:32:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000