Class org.broadinstitute.hellbender.engine.LocusWalkerUnitTest

2

tests

0

failures

0

ignored

0.025s

duration

100%

successful

Tests

Test Duration Result
testEmitUncoveredLoci 0.013s passed
testTransformReads 0.012s passed

Standard error

20:13:37.983 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
20:13:37.983 INFO  TestEmitUncoveredLociTool - org.broadinstitute.hellbender.engine vUnavailable
20:13:37.983 INFO  TestEmitUncoveredLociTool - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:37.983 INFO  TestEmitUncoveredLociTool - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:37.984 INFO  TestEmitUncoveredLociTool - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:37.984 INFO  TestEmitUncoveredLociTool - Start Date/Time: February 10, 2025 at 8:13:37 PM UTC
20:13:37.984 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
20:13:37.984 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
20:13:37.984 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:37.984 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:37.984 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:37.984 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:37.984 INFO  TestEmitUncoveredLociTool - Deflater: IntelDeflater
20:13:37.984 INFO  TestEmitUncoveredLociTool - Inflater: IntelInflater
20:13:37.984 INFO  TestEmitUncoveredLociTool - GCS max retries/reopens: 20
20:13:37.984 INFO  TestEmitUncoveredLociTool - Requester pays: disabled
20:13:37.984 INFO  TestEmitUncoveredLociTool - Initializing engine
20:13:37.988 INFO  IntervalArgumentCollection - Processing 10 bp from intervals
20:13:37.988 INFO  TestEmitUncoveredLociTool - Done initializing engine
20:13:37.988 INFO  ProgressMeter - Starting traversal
20:13:37.988 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:13:37.990 INFO  TestEmitUncoveredLociTool - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 5 reads processed
20:13:37.990 INFO  ProgressMeter -             unmapped              0.0                    10         300000.0
20:13:37.990 INFO  ProgressMeter - Traversal complete. Processed 10 total loci in 0.0 minutes.
20:13:37.990 INFO  TestEmitUncoveredLociTool - Shutting down engine
[February 10, 2025 at 8:13:37 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestEmitUncoveredLociTool done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:37.997 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:13:37.997 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:37.997 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:37.997 INFO  TestTransformedLocusWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:37.997 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:37.997 INFO  TestTransformedLocusWalker - Start Date/Time: February 10, 2025 at 8:13:37 PM UTC
20:13:37.997 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:13:37.997 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:13:37.997 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:37.997 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:37.997 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:37.997 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:37.997 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:13:37.997 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:13:37.997 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:13:37.997 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:13:37.997 INFO  TestTransformedLocusWalker - Initializing engine
20:13:38.000 INFO  IntervalArgumentCollection - Processing 1 bp from intervals
20:13:38.000 INFO  TestTransformedLocusWalker - Done initializing engine
20:13:38.000 INFO  ProgressMeter - Starting traversal
20:13:38.000 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:13:38.002 INFO  TestTransformedLocusWalker - 0 read(s) filtered by:  

20:13:38.002 INFO  ProgressMeter -             unmapped              0.0                     1          30000.0
20:13:38.002 INFO  ProgressMeter - Traversal complete. Processed 1 total loci in 0.0 minutes.
20:13:38.002 INFO  TestTransformedLocusWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416