Class org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest

all > org.broadinstitute.hellbender.engine > MultiplePassReadWalkerUnitTest
tests
failures
ignored
0.109s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testIntervalFiltering[0](/count_reads_sorted.bam)	0.011s	passed
testIntervalFiltering[1](/count_reads_sorted.cram)	0.014s	passed
testPassCounts[0](0)	0.005s	passed
testPassCounts[1](1)	0.005s	passed
testPassCounts[2](2)	0.005s	passed
testPassCounts[3](5)	0.007s	passed
testPassCounts[4](25)	0.011s	passed
testRejectAttemptToIndexNonIndexableInput[0](/count_reads.bam)	0.009s	passed
testRejectAttemptToIndexNonIndexableInput[1](/count_reads.sam)	0.007s	passed
testRejectAttemptToIndexNonIndexableInput[2](/count_reads.cram)	0.007s	passed
testTwoPass[0](/count_reads.bam)	0.007s	passed
testTwoPass[1](/count_reads.sam)	0.010s	passed
testTwoPass[2](/count_reads.cram)	0.011s	passed
Standard error

20:13:38.221 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.221 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.221 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.221 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.221 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.221 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.221 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.221 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.221 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.221 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.221 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.221 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.221 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.221 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.221 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.221 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.221 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.225 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:13:38.226 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.226 INFO  ProgressMeter - Starting traversal
20:13:38.226 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.227 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.228 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.228 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.228 INFO  ProgressMeter -             unmapped              0.0                    10         300000.0
20:13:38.228 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
20:13:38.228 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.233 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.233 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.233 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.233 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.233 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.233 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.233 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.233 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.233 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.233 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.233 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.233 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.233 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.233 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.233 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.233 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.233 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.236 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:13:38.236 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.236 INFO  ProgressMeter - Starting traversal
20:13:38.237 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.243 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.243 INFO  ProgressMeter -             unmapped              0.0                    10         100000.0
20:13:38.243 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
20:13:38.243 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.248 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.248 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.248 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.248 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.248 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.248 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.248 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.248 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.248 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.248 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.248 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.248 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.248 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.248 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.248 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.248 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.248 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.249 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.249 INFO  ProgressMeter - Starting traversal
20:13:38.249 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.249 INFO  ProgressMeter -             unmapped              0.0                     0              NaN
20:13:38.249 INFO  ProgressMeter - Traversal complete. Processed 0 total reads in 0.0 minutes.
20:13:38.249 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.253 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.253 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.253 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.253 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.253 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.253 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.253 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.253 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.253 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.253 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.253 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.253 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.253 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.253 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.253 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.253 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.253 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.254 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.254 INFO  ProgressMeter - Starting traversal
20:13:38.254 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.254 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.254 INFO  ProgressMeter -             unmapped              0.0                     8         Infinity
20:13:38.254 INFO  ProgressMeter - Traversal complete. Processed 8 total reads in 0.0 minutes.
20:13:38.254 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.258 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.258 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.258 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.258 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.258 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.258 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.258 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.258 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.258 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.258 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.258 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.258 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.258 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.258 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.258 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.259 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.259 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.259 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.259 INFO  ProgressMeter - Starting traversal
20:13:38.259 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.259 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.259 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.260 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.260 INFO  ProgressMeter -             unmapped              0.0                    16         960000.0
20:13:38.260 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:13:38.260 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.264 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.264 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.264 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.264 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.264 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.264 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.264 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.264 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.264 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.264 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.264 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.264 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.264 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.264 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.264 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.264 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.264 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.265 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.265 INFO  ProgressMeter - Starting traversal
20:13:38.265 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.265 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.265 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.265 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.265 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
20:13:38.266 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.266 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
20:13:38.266 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.266 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
20:13:38.266 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.266 INFO  ProgressMeter -             unmapped              0.0                    40        2400000.0
20:13:38.266 INFO  ProgressMeter - Traversal complete. Processed 40 total reads in 0.0 minutes.
20:13:38.266 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.271 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.271 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.271 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.271 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.271 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.271 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.271 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.271 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.271 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.271 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.271 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.271 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.271 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.271 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.271 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.271 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.271 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.271 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.272 INFO  ProgressMeter - Starting traversal
20:13:38.272 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.272 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.272 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.272 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.272 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
20:13:38.272 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.272 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
20:13:38.273 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.273 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
20:13:38.273 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.273 INFO  dummyMultiplePassReadWalker - Starting traversal pass 6
20:13:38.273 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.273 INFO  dummyMultiplePassReadWalker - Starting traversal pass 7
20:13:38.273 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.273 INFO  dummyMultiplePassReadWalker - Starting traversal pass 8
20:13:38.274 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.274 INFO  dummyMultiplePassReadWalker - Starting traversal pass 9
20:13:38.274 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.274 INFO  dummyMultiplePassReadWalker - Starting traversal pass 10
20:13:38.274 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.274 INFO  dummyMultiplePassReadWalker - Starting traversal pass 11
20:13:38.274 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.275 INFO  dummyMultiplePassReadWalker - Starting traversal pass 12
20:13:38.275 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.275 INFO  dummyMultiplePassReadWalker - Starting traversal pass 13
20:13:38.275 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.275 INFO  dummyMultiplePassReadWalker - Starting traversal pass 14
20:13:38.275 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.275 INFO  dummyMultiplePassReadWalker - Starting traversal pass 15
20:13:38.275 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.275 INFO  dummyMultiplePassReadWalker - Starting traversal pass 16
20:13:38.276 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.276 INFO  dummyMultiplePassReadWalker - Starting traversal pass 17
20:13:38.276 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.276 INFO  dummyMultiplePassReadWalker - Starting traversal pass 18
20:13:38.276 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.276 INFO  dummyMultiplePassReadWalker - Starting traversal pass 19
20:13:38.276 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.276 INFO  dummyMultiplePassReadWalker - Starting traversal pass 20
20:13:38.277 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.277 INFO  dummyMultiplePassReadWalker - Starting traversal pass 21
20:13:38.277 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.277 INFO  dummyMultiplePassReadWalker - Starting traversal pass 22
20:13:38.277 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.277 INFO  dummyMultiplePassReadWalker - Starting traversal pass 23
20:13:38.277 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.277 INFO  dummyMultiplePassReadWalker - Starting traversal pass 24
20:13:38.277 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.278 INFO  dummyMultiplePassReadWalker - Starting traversal pass 25
20:13:38.278 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.278 INFO  ProgressMeter -             unmapped              0.0                   200        2000000.0
20:13:38.278 INFO  ProgressMeter - Traversal complete. Processed 200 total reads in 0.0 minutes.
20:13:38.278 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.282 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.282 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.282 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.282 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.282 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.282 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.282 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.282 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.283 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.283 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.283 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.283 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.283 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.283 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.283 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.283 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.283 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.286 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:13:38.287 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.291 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.291 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.291 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.291 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.291 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.291 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.291 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.291 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.291 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.291 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.291 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.291 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.291 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.291 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.291 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.291 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.291 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.294 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:13:38.294 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.298 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.298 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.298 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.298 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.298 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.298 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.298 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.298 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.298 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.298 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.298 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.298 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.299 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.299 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.299 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.299 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.299 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.301 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:13:38.301 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.305 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.305 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.305 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.305 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.305 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.305 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.305 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.305 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.306 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.306 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.306 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.306 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.306 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.306 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.306 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.306 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.306 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.307 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.307 INFO  ProgressMeter - Starting traversal
20:13:38.307 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.307 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.308 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.308 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.308 INFO  ProgressMeter -             unmapped              0.0                    16         960000.0
20:13:38.308 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:13:38.308 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.313 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.313 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.313 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.313 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.313 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.313 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.313 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.313 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.313 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.313 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.313 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.313 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.313 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.313 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.313 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.313 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.313 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.314 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.314 INFO  ProgressMeter - Starting traversal
20:13:38.314 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.317 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.317 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.318 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.318 INFO  ProgressMeter -             unmapped              0.0                    16         240000.0
20:13:38.318 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:13:38.318 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416
20:13:38.322 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.322 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.322 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.322 INFO  dummyMultiplePassReadWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.322 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.322 INFO  dummyMultiplePassReadWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.322 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.322 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:13:38.322 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.322 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.322 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.322 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.322 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:13:38.322 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:13:38.322 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:13:38.322 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:13:38.322 INFO  dummyMultiplePassReadWalker - Initializing engine
20:13:38.323 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:13:38.323 INFO  ProgressMeter - Starting traversal
20:13:38.323 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:13:38.327 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.327 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:13:38.329 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:13:38.329 INFO  ProgressMeter -             unmapped              0.0                    16         160000.0
20:13:38.329 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:13:38.329 INFO  dummyMultiplePassReadWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416