Class org.broadinstitute.hellbender.engine.MultiplePassVariantWalkerUnitTest

1

tests

0

failures

0

ignored

0.011s

duration

100%

successful

Tests

Test Duration Result
testTwoPassTraversal 0.011s passed

Standard error

20:13:38.335 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
20:13:38.335 INFO  DummyMultiplePassVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:13:38.335 INFO  DummyMultiplePassVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:13:38.335 INFO  DummyMultiplePassVariantWalker - Executing as runner@fv-az1120-225 on Linux v6.8.0-1020-azure amd64
20:13:38.335 INFO  DummyMultiplePassVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:13:38.335 INFO  DummyMultiplePassVariantWalker - Start Date/Time: February 10, 2025 at 8:13:38 PM UTC
20:13:38.335 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
20:13:38.335 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
20:13:38.336 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:13:38.336 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:13:38.336 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:13:38.336 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:13:38.336 INFO  DummyMultiplePassVariantWalker - Deflater: IntelDeflater
20:13:38.336 INFO  DummyMultiplePassVariantWalker - Inflater: IntelInflater
20:13:38.336 INFO  DummyMultiplePassVariantWalker - GCS max retries/reopens: 20
20:13:38.336 INFO  DummyMultiplePassVariantWalker - Requester pays: disabled
20:13:38.336 INFO  DummyMultiplePassVariantWalker - Initializing engine
20:13:38.337 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf
20:13:38.338 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
20:13:38.338 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
20:13:38.339 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
20:13:38.339 INFO  DummyMultiplePassVariantWalker - Done initializing engine
20:13:38.339 INFO  ProgressMeter - Starting traversal
20:13:38.339 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
20:13:38.339 INFO  DummyMultiplePassVariantWalker - Starting pass 0 through the variants
20:13:38.341 INFO  DummyMultiplePassVariantWalker - Finished pass 0 through the variants
20:13:38.341 INFO  DummyMultiplePassVariantWalker - Starting pass 1 through the variants
20:13:38.342 INFO  DummyMultiplePassVariantWalker - Finished pass 1 through the variants
20:13:38.342 INFO  DummyMultiplePassVariantWalker - No variants filtered by: AllowAllVariantsVariantFilter
20:13:38.342 INFO  DummyMultiplePassVariantWalker - 0 read(s) filtered by: AllowAllReadsReadFilter 

20:13:38.342 INFO  ProgressMeter -             unmapped              0.0                   104        2080000.0
20:13:38.342 INFO  ProgressMeter - Traversal complete. Processed 104 total variants in 0.0 minutes.
20:13:38.342 INFO  DummyMultiplePassVariantWalker - Shutting down engine
[February 10, 2025 at 8:13:38 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassVariantWalkerUnitTest$DummyMultiplePassVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=750780416