| Test |
Duration |
Result |
| testCustomSamReaderFactory |
0.002s |
passed |
| testDefaultSamReaderValidationStringency |
0.001s |
passed |
| testHandleEmptyFileList |
0s |
passed |
| testHandleNonExistentFile |
0s |
passed |
| testHandleNullFile |
0s |
passed |
| testHandleNullFileList |
0.001s |
passed |
| testHandleUnindexedFileQuery |
0.001s |
passed |
| testHandleUnindexedFileWithIntervals |
0s |
passed |
| testIdentifySortOrder[0]([], unsorted) |
0s |
passed |
| testIdentifySortOrder[1]([SAMFileHeader{VN=1.6, SO=unknown}], unknown) |
0s |
passed |
| testIdentifySortOrder[2]([SAMFileHeader{VN=1.6, SO=coordinate}], coordinate) |
0s |
passed |
| testIdentifySortOrder[3]([SAMFileHeader{VN=1.6, SO=queryname}], queryname) |
0s |
passed |
| testIdentifySortOrder[4]([SAMFileHeader{VN=1.6, SO=unknown}, SAMFileHeader{VN=1.6, SO=unknown}], unknown) |
0s |
passed |
| testIdentifySortOrder[5]([SAMFileHeader{VN=1.6, SO=coordinate}, SAMFileHeader{VN=1.6, SO=coordinate}], coordinate) |
0s |
passed |
| testIdentifySortOrder[6]([SAMFileHeader{VN=1.6, SO=queryname}, SAMFileHeader{VN=1.6, SO=queryname}], queryname) |
0s |
passed |
| testIdentifySortOrder[7]([SAMFileHeader{VN=1.6, SO=unknown}, SAMFileHeader{VN=1.6, SO=coordinate}, SAMFileHeader{VN=1.6, SO=queryname}], unsorted) |
0s |
passed |
| testIdentifySortOrder[8]([SAMFileHeader{VN=1.6, SO=coordinate}, SAMFileHeader{VN=1.6, SO=coordinate}, SAMFileHeader{VN=1.6, SO=queryname}], unsorted) |
0s |
passed |
| testManuallySpecifiedIndicesEmptyIndexList[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0s |
passed |
| testManuallySpecifiedIndicesNullIndexListOK[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0s |
passed |
| testManuallySpecifiedIndicesWithCustomReaderFactoryAndNullWrappers[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0.001s |
passed |
| testManuallySpecifiedIndicesWithCustomReaderFactory[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0.001s |
passed |
| testManuallySpecifiedIndicesWrongNumberOfIndices[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0s |
passed |
| testManuallySpecifiedIndices[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/reads_data_source_test2.bam], [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test1.bam.bai, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/readIndexTest/indices/reads_data_source_test2.bam.bai]) |
0.006s |
passed |
| testMergedQueryWithFileSpecificContigs[0]([Lorg.broadinstitute.hellbender.utils.SimpleInterval;@431782fe, [Ljava.lang.String;@6e16fcaf, [I@2680474c) |
0.017s |
passed |
| testMergedQueryWithFileSpecificContigs[1]([Lorg.broadinstitute.hellbender.utils.SimpleInterval;@890196b, [Ljava.lang.String;@12e1413c, [I@41b6ae51) |
0.006s |
passed |
| testMergedQueryWithFileSpecificContigs[2]([Lorg.broadinstitute.hellbender.utils.SimpleInterval;@1e2c701, [Ljava.lang.String;@21e441d1, [I@711329fe) |
0.005s |
passed |
| testMergedQueryWithFileSpecificContigs[3]([Lorg.broadinstitute.hellbender.utils.SimpleInterval;@5e8ec0d9, [Ljava.lang.String;@1a7f6678, [I@3b47178c) |
0.011s |
passed |
| testMultipleFilesCompleteTraversal[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam], [a, b, l, c, m, n, d, e, o, f, p, g, h, q, r, s, t, i, j, u, v, k]) |
0.002s |
passed |
| testMultipleFilesCompleteTraversal[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [l, m, n, o, p, q, r, s, w, t, x, u, v, y, z]) |
0.002s |
passed |
| testMultipleFilesCompleteTraversal[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [a, b, c, d, e, f, g, h, w, x, i, j, y, k, z]) |
0.001s |
passed |
| testMultipleFilesCompleteTraversal[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [a, b, l, c, m, n, d, e, o, f, p, g, h, q, r, s, w, t, x, i, j, u, v, y, k, z]) |
0.003s |
passed |
| testMultipleFilesQueryByInterval[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], 1:285-1000, [c, m, n, d]) |
0.002s |
passed |
| testMultipleFilesQueryByInterval[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], 3:200-300, [t, x, i]) |
0.001s |
passed |
| testMultipleFilesQueryByInterval[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], 1:9000-11000, [o]) |
0.001s |
passed |
| testMultipleFilesQueryByInterval[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], 3:1-16000, [w, t, x, i, j, u, v]) |
0.002s |
passed |
| testMultipleFilesQueryByInterval[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], 2:10000-12000, []) |
0.002s |
passed |
| testMultipleFilesTraversalWithIntervals[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [1:205-207, 1:400-1000, 4:500-704], [a, b, l, n, d, y, k]) |
0.002s |
passed |
| testMultipleFilesTraversalWithIntervals[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [4:500-704, 1:400-1000, 1:205-207], [a, b, l, n, d, y, k]) |
0.004s |
passed |
| testMultipleFilesTraversalWithIntervals[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [2:500-600, 2:2099-2200, 3:50-100, 3:300-500], [f, p, g, s, w, i, j, u]) |
0.001s |
passed |
| testMultipleFilesTraversalWithIntervals[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [1:1-300, 1:100-500, 1:200-600], [a, b, l, c, m, n]) |
0.003s |
passed |
| testMultipleFilesTraversalWithIntervals[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [1:11000-12000, 3:1000-2000], []) |
0.001s |
passed |
| testMultipleFilesTraversalWithIntervals[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam], [1:1-16000, 2:1-16000, 3:1-16000, 4:1-16000], [a, b, l, c, m, n, d, e, o, f, p, g, h, q, r, s, w, t, x, i, j, u, v, y, k, z]) |
0.002s |
passed |
| testQueryUnmapped[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [u1, u2, u3, u4, u5]) |
0.002s |
passed |
| testQueryUnmapped[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [g, h, h, i, i]) |
0.001s |
passed |
| testSingleFileCompleteTraversal[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [a, b, c, d, e, f, g, h, i, j, k]) |
0.001s |
passed |
| testSingleFileCompleteTraversal[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, [l, m, n, o, p, q, r, s, t, u, v]) |
0s |
passed |
| testSingleFileCompleteTraversal[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam, [w, x, y, z]) |
0.001s |
passed |
| testSingleFileQueryByIntervalSerialIteration[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 1:200-209, [a, b]) |
0.001s |
passed |
| testSingleFileQueryByIntervalSerialIteration[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 1:285-1100, [c, d, e]) |
0s |
passed |
| testSingleFileQueryByIntervalSerialIteration[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 2:550-649, [f, g]) |
0.001s |
passed |
| testSingleFileQueryByIntervalSerialIteration[3](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 3:399-400, [j]) |
0s |
passed |
| testSingleFileQueryByIntervalSerialIteration[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 4:100-200, []) |
0.001s |
passed |
| testSingleFileQueryByIntervalSerialIteration[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 4:600-699, []) |
0.001s |
passed |
| testSingleFileQueryByInterval[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 1:200-209, [a, b]) |
0.001s |
passed |
| testSingleFileQueryByInterval[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 1:285-1100, [c, d, e]) |
0s |
passed |
| testSingleFileQueryByInterval[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 2:550-649, [f, g]) |
0s |
passed |
| testSingleFileQueryByInterval[3](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 3:399-400, [j]) |
0s |
passed |
| testSingleFileQueryByInterval[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 4:100-200, []) |
0s |
passed |
| testSingleFileQueryByInterval[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, 4:600-699, []) |
0.001s |
passed |
| testSingleFileSerialTraversal[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [a, b, c, d, e, f, g, h, i, j, k]) |
0s |
passed |
| testSingleFileSerialTraversal[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam, [l, m, n, o, p, q, r, s, t, u, v]) |
0.001s |
passed |
| testSingleFileSerialTraversal[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test3.bam, [w, x, y, z]) |
0.001s |
passed |
| testSingleFileTraversalWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:200-210, 2:550-700, 4:700-701], [a, b, c, f, g, h, k]) |
0.001s |
passed |
| testSingleFileTraversalWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:205-209, 3:400-410], [a, b, j]) |
0.001s |
passed |
| testSingleFileTraversalWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:999-1200, 2:530-625, 4:1000-1200], [d, e, f, g]) |
0s |
passed |
| testSingleFileTraversalWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:900-1100, 1:1000-1200], [d, e]) |
0s |
passed |
| testSingleFileTraversalWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:1000-1099], [d]) |
0s |
passed |
| testSingleFileTraversalWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:2000-3000, 1:4000-5000, 2:1000-2000], []) |
0.001s |
passed |
| testSupportsSerialIteration[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam], true) |
0.001s |
passed |
| testSupportsSerialIteration[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test2.bam], true) |
0s |
passed |
| testSupportsSerialIteration[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/invalid_coord_sort_order.sam], false) |
0.001s |
passed |
| testSupportsSerialIteration[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/invalid_coord_sort_order.sam], false) |
0.001s |
passed |
| testTraversalWithUnmappedReads[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000], false, [a, b, c, d]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[10](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, null, true, []) |
0.001s |
passed |
| testTraversalWithUnmappedReads[11](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [], true, []) |
0s |
passed |
| testTraversalWithUnmappedReads[12](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, false, [a, b, c, d, e, f, g, h, i, j, k, u1, u2, u3, u4, u5]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[13](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [], false, [a, b, c, d, e, f, g, h, i, j, k, u1, u2, u3, u4, u5]) |
0s |
passed |
| testTraversalWithUnmappedReads[14](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000011-10000013], false, [a, b, c, d, e, f, f]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[15](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000011-10000013], true, [a, b, c, d, e, f, f, g, h, h, i, i]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[16](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000009-10000011], false, [a, b, c, d, e]) |
0s |
passed |
| testTraversalWithUnmappedReads[17](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000009-10000011], true, [a, b, c, d, e, g, h, h, i, i]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000], true, [a, b, c, d, u1, u2, u3, u4, u5]) |
0s |
passed |
| testTraversalWithUnmappedReads[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000, 2:500-700, 4:700-701], false, [a, b, c, d, f, g, h, k]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[3](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000, 2:500-700, 4:700-701], true, [a, b, c, d, f, g, h, k, u1, u2, u3, u4, u5]) |
0s |
passed |
| testTraversalWithUnmappedReads[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:3000-4000], false, []) |
0.001s |
passed |
| testTraversalWithUnmappedReads[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:3000-4000], true, [u1, u2, u3, u4, u5]) |
0s |
passed |
| testTraversalWithUnmappedReads[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:3000-4000], true, []) |
0.001s |
passed |
| testTraversalWithUnmappedReads[7](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:200-1000], true, [a, b, c, d]) |
0s |
passed |
| testTraversalWithUnmappedReads[8](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, true, [u1, u2, u3, u4, u5]) |
0.001s |
passed |
| testTraversalWithUnmappedReads[9](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [], true, [u1, u2, u3, u4, u5]) |
0s |
passed |