Class org.broadinstitute.hellbender.tools.spark.pathseq.PSBuildReferenceTaxonomyUtilsTest

all > org.broadinstitute.hellbender.tools.spark.pathseq > PSBuildReferenceTaxonomyUtilsTest
13

tests
0

failures
0

ignored
0.005s

duration
100%

successful

Tests

Test Duration Result
testBuildEmptyTaxonomicTree 0.002s passed
testBuildReferenceNameToTaxMap 0s passed
testBuildTaxonomicTree 0s passed
testCloseReader 0s passed
testEmptyBuildTaxonomicTree 0s passed
testGetFileReaderGz 0s passed
testGetTarGzReaderBadArchivedFile 0.001s passed
testGetTarGzReaderBadTar 0s passed
testParseCatalog 0.002s passed
testParseNamesFile 0s passed
testParseNodesFile 0s passed
testParseReferenceRecords 0s passed
testRemoveUnusedTaxIds 0s passed

Standard error

20:22:00.728 WARN  PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5
20:22:00.728 WARN  PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5