| Test |
Duration |
Result |
| testAdd |
0.020s |
passed |
| testAddMaxCliqueLarge |
0.077s |
passed |
| testAddVaryPositions[0](10000, 20001, 12000, 22001, 14000, 24001, SINGLE_LINKAGE, 1) |
0s |
passed |
| testAddVaryPositions[1](10000, 20001, 12000, 22001, 14001, 24002, SINGLE_LINKAGE, 2) |
0.001s |
passed |
| testAddVaryPositions[2](10000, 20001, 12001, 22002, 14002, 24003, SINGLE_LINKAGE, 3) |
0s |
passed |
| testAddVaryPositions[3](10000, 20001, 11000, 21001, 12000, 22001, MAX_CLIQUE, 1) |
0s |
passed |
| testAddVaryPositions[4](10000, 20001, 12000, 22001, 14000, 24001, MAX_CLIQUE, 2) |
0.001s |
passed |
| testAddVaryPositions[5](10000, 20001, 12001, 22002, 14002, 24003, MAX_CLIQUE, 3) |
0s |
passed |
| testClusterTogether |
0.001s |
passed |
| testClusterTogetherCNVs |
0s |
passed |
| testClusterTogetherInsertedComplex[0](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3298f96a], true) |
0s |
passed |
| testClusterTogetherInsertedComplex[1](chr1, 1010, chr1, 1010, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@329be6fc], true) |
0s |
passed |
| testClusterTogetherInsertedComplex[2](chr1, 2000, chr1, 3000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@329be6fc], false) |
0s |
passed |
| testClusterTogetherInsertedComplex[3](chr1, 1000, chr1, 1000, dDUP_iDEL, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3298f96a], false) |
0s |
passed |
| testClusterTogetherInsertedComplex[4](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@32c6626a], false) |
0s |
passed |
| testClusterTogetherInsertedComplex[5](chr1, 1000, chr1, 1000, dDUP, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3c13716e], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[0](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd00992], true) |
0s |
passed |
| testClusterTogetherIntervaledComplex[1](chr1, 1100, chr1, 1900, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53c3013, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd0b928], true) |
0.001s |
passed |
| testClusterTogetherIntervaledComplex[2](chr2, 1000, chr2, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd00992], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[3](chr1, 1600, chr1, 2400, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd00992], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[4](chr1, 1000, chr1, 2000, delINVdel, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd00992], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[5](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[6](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e536d7b7, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3bd00992], false) |
0s |
passed |
| testClusterTogetherIntervaledComplex[7](chr1, 1000, chr1, 2000, delINV, [org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@e53b6e53, org.broadinstitute.hellbender.tools.sv.SVCallRecord$ComplexEventInterval@3255918e], false) |
0.001s |
passed |
| testClusterTogetherInvalidInterval |
0s |
passed |
| testClusterTogetherVaryAlgorithms |
0s |
passed |
| testClusterTogetherVaryContigs |
0.001s |
passed |
| testClusterTogetherVaryParameters |
0s |
passed |
| testClusterTogetherVaryPositions[0](500, 1001, 1001, 1502, false) |
0s |
passed |
| testClusterTogetherVaryPositions[10](1, 10001, 1, 10001, true) |
0s |
passed |
| testClusterTogetherVaryPositions[11](248946422, 248956422, 248946422, 248956422, true) |
0s |
passed |
| testClusterTogetherVaryPositions[12](100000, 200000, 101001, 201001, false) |
0s |
passed |
| testClusterTogetherVaryPositions[13](100000, 200000, 101000, 201000, true) |
0s |
passed |
| testClusterTogetherVaryPositions[1](500, 1001, 500, 1001, true) |
0s |
passed |
| testClusterTogetherVaryPositions[2](500, 1001, 600, 1101, true) |
0s |
passed |
| testClusterTogetherVaryPositions[3](500, 1001, 601, 1102, false) |
0s |
passed |
| testClusterTogetherVaryPositions[4](500, 1000, 600, 1101, false) |
0s |
passed |
| testClusterTogetherVaryPositions[5](500, 501, 500, 501, true) |
0s |
passed |
| testClusterTogetherVaryPositions[6](500, 501, 500, 502, false) |
0s |
passed |
| testClusterTogetherVaryPositions[7](500, 500, 500, 500, true) |
0s |
passed |
| testClusterTogetherVaryPositions[8](500, 500, 501, 501, false) |
0s |
passed |
| testClusterTogetherVaryPositions[9](1, 248956422, 1, 248956422, true) |
0s |
passed |
| testClusterTogetherVaryStrands |
0s |
passed |
| testClusterTogetherVaryTypes |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[0](1000, 1000, 1000, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[1](1000, 1000, 1000, 500, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[2](1000, 1000, 1000, 2000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[3](1000, 1000, 100, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[4](1000, 1000, 1900, 1000, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[5](1000, 1000, 99, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[6](1000, 1000, 1901, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[7](1000, 1000, 1000, 499, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarityInsertions[8](1000, 2001, 1000, 1000, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[0](1001, 2000, 1001, 2000, DEL, true) |
0.001s |
passed |
| testClusterTogetherWithSizeSimilarity[1](1001, 2000, 1501, 2000, DEL, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[2](1001, 2000, 1900, 2900, DEL, true) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[3](1001, 2000, 1502, 2000, DEL, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[4](1001, 2000, 1901, 2399, DEL, false) |
0s |
passed |
| testClusterTogetherWithSizeSimilarity[5](1001, 2000, 1902, 2900, DEL, false) |
0s |
passed |
| testCollapser |
0.010s |
passed |
| testGetCarrierSamplesBiallelic[0](0, null, null, [I@5d4042fc, [Ljava.lang.String;@6b06da60) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[10](2, N*, <DEL>, [I@3ca9e72d, [Ljava.lang.String;@4dcb8e8b) |
0s |
passed |
| testGetCarrierSamplesBiallelic[11](2, N*, <DEL>, [I@7287811f, [Ljava.lang.String;@1e490ed) |
0s |
passed |
| testGetCarrierSamplesBiallelic[12](2, N*, <DEL>, [I@61b5c8a3, [Ljava.lang.String;@2f7432f3) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[13](2, N*, <DUP>, [I@4d73b25b, [Ljava.lang.String;@24c8b86) |
0s |
passed |
| testGetCarrierSamplesBiallelic[14](2, N*, <DUP>, [I@13ecedf6, [Ljava.lang.String;@435d74ba) |
0s |
passed |
| testGetCarrierSamplesBiallelic[15](3, N*, <DEL>, [I@279c94ad, [Ljava.lang.String;@53eb4ef5) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[16](3, N*, <DEL>, [I@4a3b0387, [Ljava.lang.String;@6967cdee) |
0s |
passed |
| testGetCarrierSamplesBiallelic[1](0, null, <DEL>, [I@7cf1bf54, [Ljava.lang.String;@3919e2d7) |
0s |
passed |
| testGetCarrierSamplesBiallelic[2](0, N*, null, [I@106277d6, [Ljava.lang.String;@61186191) |
0s |
passed |
| testGetCarrierSamplesBiallelic[3](0, ., null, [I@abb1c3e, [Ljava.lang.String;@9640678) |
0s |
passed |
| testGetCarrierSamplesBiallelic[4](0, ., <DEL>, [I@356c8fa9, [Ljava.lang.String;@67e42fd6) |
0s |
passed |
| testGetCarrierSamplesBiallelic[5](0, N*, <DEL>, [I@72a522f1, [Ljava.lang.String;@2365facb) |
0s |
passed |
| testGetCarrierSamplesBiallelic[6](0, N*, <DEL>, [I@7e2cebdf, [Ljava.lang.String;@25c5fc41) |
0s |
passed |
| testGetCarrierSamplesBiallelic[7](1, N*, <DEL>, [I@33681da, [Ljava.lang.String;@1a5df070) |
0s |
passed |
| testGetCarrierSamplesBiallelic[8](1, N*, <DEL>, [I@6eb8fd79, [Ljava.lang.String;@59b78925) |
0.001s |
passed |
| testGetCarrierSamplesBiallelic[9](2, N*, <DEL>, [I@3df99d5e, [Ljava.lang.String;@1483ecad) |
0s |
passed |
| testGetClusteringIntervalEdge |
0s |
passed |
| testGetClusteringIntervalLists |
0s |
passed |
| testGetMaxClusterableStartingPosition[0](100, 200) |
0s |
passed |
| testGetMaxClusterableStartingPosition[1](50000, 500000) |
0s |
passed |
| testGetMaxClusterableStartingPosition[2](1, 1) |
0s |
passed |
| testGetMaxClusterableStartingPosition[3](1, 2) |
0s |
passed |
| testIsDepthOnlyCall |
0s |
passed |
| testLargeRandom |
0.723s |
passed |
| testMatchCNVNoGT[0](0, [I@7cb8109, [I@2779acb2, true) |
0s |
passed |
| testMatchCNVNoGT[10](2, [I@12aa9370, [I@2338eeef, false) |
0s |
passed |
| testMatchCNVNoGT[11](2, [I@27c05ed9, [I@61377842, false) |
0s |
passed |
| testMatchCNVNoGT[12](2, [I@26f29ee5, [I@3e13a74, false) |
0s |
passed |
| testMatchCNVNoGT[1](0, [I@106a6a1b, [I@4b7272d6, true) |
0s |
passed |
| testMatchCNVNoGT[2](1, [I@376aaeec, [I@749330a8, true) |
0s |
passed |
| testMatchCNVNoGT[3](2, [I@2f71bb66, [I@4d8e6daa, true) |
0s |
passed |
| testMatchCNVNoGT[4](2, [I@74cf108b, [I@56c72fff, true) |
0s |
passed |
| testMatchCNVNoGT[5](2, [I@60f10f6a, [I@6c3600b7, false) |
0s |
passed |
| testMatchCNVNoGT[6](2, [I@3c995eae, [I@54fb9c08, false) |
0s |
passed |
| testMatchCNVNoGT[7](2, [I@6dd729, [I@767785a4, true) |
0.001s |
passed |
| testMatchCNVNoGT[8](2, [I@5634f627, [I@380ea757, true) |
0s |
passed |
| testMatchCNVNoGT[9](2, [I@2e43fc06, [I@5fb7b227, false) |
0s |
passed |