Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > InbreedingCoeffUnitTest
15

tests
0

failures
0

ignored
1.753s

duration
100%

successful

Tests

Test Duration Result
compareOldWithReblocked 0.003s passed
testAllHetsForLargeCohorts 0.683s passed
testEmptyIfNoGenotypes 0.001s passed
testInbreedingCoeffForMultiallelicVC 0s passed
testInbreedingCoeffForMultiallelicVC_AS 0.005s passed
testInbreedingCoeffForMultiallelicVC_refAltFlip 0s passed
testInbreedingCoeffForMultiallelicVC_usingFounders 0s passed
testInbreedingCoeffForMultiallelicVC_usingPedigreeFile 0.001s passed
testLabels 0s passed
testLabels_AS 0s passed
testLargeCohorts 1.049s passed
testRoundingIsntAppliedToEachGenotype 0s passed
testSingletonVsCommonAllele 0.005s passed
testSingletonVsCommonAllele_refAltFlip 0.005s passed
testTinyCohorts_AS 0.001s passed

Standard error

20:22:38.974 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
20:22:38.974 DEBUG GenomeLocParser -  1 (16000 bp)
20:22:38.974 DEBUG GenomeLocParser -  2 (16000 bp)
20:22:38.974 DEBUG GenomeLocParser -  3 (16000 bp)
20:22:38.974 DEBUG GenomeLocParser -  4 (16000 bp)
20:22:39.664 WARN  InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
20:22:39.670 INFO  PedReader - Phenotype is other? false