| Test |
Duration |
Result |
| testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp16424250866470460232.tar.gz, true, MODERATE) |
0.001s |
passed |
| testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp211210197406215869166.fasta, false, MODERATE) |
0s |
passed |
| testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp32818536280677867732.vcf, true, MINIMAL) |
0s |
passed |
| testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp411293873015532072169.fasta, false, MINIMAL) |
0.001s |
passed |
| testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp53136254875327715967.vcf, null, MINIMAL) |
0s |
passed |
| testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp618113110490541181604.xsv, false, null) |
0s |
passed |
| testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp71497233769911886505.vcf, null, null) |
0.001s |
passed |
| testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp9823730956591784752.tar.gz, true, MODERATE) |
0.001s |
passed |
| testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp214133535691196842572.fasta, false, MODERATE) |
0s |
passed |
| testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp38276939712760666611.vcf, true, MINIMAL) |
0s |
passed |
| testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp410326118433564397086.fasta, false, MINIMAL) |
0.001s |
passed |
| testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp53641054819351372346.vcf, null, MINIMAL) |
0s |
passed |
| testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp612927024485611832450.xsv, false, null) |
0s |
passed |
| testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp73291768914475957561.vcf, null, null) |
0s |
passed |
| testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp16609251147208811038.tar.gz, true, MODERATE) |
0s |
passed |
| testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp24066861794428661096.fasta, false, MODERATE) |
0.001s |
passed |
| testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp35183944518991644038.vcf, true, MINIMAL) |
0s |
passed |
| testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp42886120986393467577.fasta, false, MINIMAL) |
0s |
passed |
| testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp512568561593936208808.vcf, null, MINIMAL) |
0.001s |
passed |
| testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp68064003231125638003.xsv, false, null) |
0s |
passed |
| testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp79089909296653846730.vcf, null, null) |
0s |
passed |
| testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp18110937879512306982.tar.gz, true, MODERATE) |
0s |
passed |
| testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp284919742190517010.fasta, false, MODERATE) |
0s |
passed |
| testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp31104755428687569647.vcf, true, MINIMAL) |
0.001s |
passed |
| testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp47383019983258953858.fasta, false, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp54590060721917986706.vcf, null, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp66179832921051897229.xsv, false, null) |
0.001s |
passed |
| testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp73631439283210935839.vcf, null, null) |
0s |
passed |
| testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp3474207562714598675.tar.gz, true, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp27630013330122442450.fasta, false, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp36144524387039150418.vcf, true, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp48749616338410460980.fasta, false, MINIMAL) |
0.001s |
passed |
| testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp57183163905649302243.vcf, null, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp617354967501269372298.xsv, false, null) |
0s |
passed |
| testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp711148459744828046166.vcf, null, null) |
0.001s |
passed |
| testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp15932857928245691753.tar.gz, false, MODERATE, false) |
0s |
passed |
| testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1888229609576931290.tar.gz, true, MODERATE, true) |
0s |
passed |
| testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp7567250867051118090.tar.gz, true, MODERATE, MODERATE) |
0s |
passed |
| testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4037072705317487921.tar.gz, true, MINIMAL, MINIMAL) |
0.001s |
passed |
| testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1901688703339756138.tar.gz, true, SILENT, SILENT) |
0s |
passed |
| testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17498019466183825068.tar.gz, true, VERBOSE, VERBOSE) |
0s |
passed |
| testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1410768601777991331.tar.gz, true, null, MODERATE) |
0s |
passed |