Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testConvertHeaderlessHadoopBamShardToBam | 0.005s | passed |
| testInvalidSort | 1.438s | passed |
| testPathExists | 1.860s | passed |
| testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@7ab971c3) | 0.679s | passed |
| testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@698a3a7c) | 0.063s | passed |
| testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@78f56c3e) | 0.075s | passed |
| testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@188cc8b8) | 0.059s | passed |
| testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@16131e3a) | 0.057s | passed |
| testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@d649d5a) | 0.050s | passed |
| testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@5307b55b) | 0.054s | passed |
| testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@5b54f2ef) | 0.054s | passed |
| testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@71c75bd6) | 0.054s | passed |
| testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@571cec59) | 0.053s | passed |
| testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@74a6d2de) | 0.051s | passed |
| testReadsMustBeQueryGroupedToFixPartitions | 0.002s | passed |
| testReadsPairsSpanningMultiplePartitions | 0.310s | passed |
| testSortCoordinateSortMatchesHtsjdk | 0.461s | passed |
| testSortQuerynameFixesPartitionBoundaries | 0.259s | passed |
| testSortQuerynameSortMatchesHtsjdk | 0.644s | passed |
| testSortUsingElementsAsKeys | 0.064s | passed |
Standard error
20:26:38.633 WARN NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 20:26:40.249 WARN MetricsConfig - Cannot locate configuration: tried hadoop-metrics2-namenode.properties,hadoop-metrics2.properties 20:26:40.363 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:26:40.366 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:26:40.431 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:26:40.774 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:26:40.850 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:26:40.850 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:26:40.948 WARN DatanodeHttpServer - Got null for restCsrfPreventionFilter - will not do any filtering. 20:26:40.985 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:26:41.239 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage13950557850213491455/data/data1/current/BP-1681807949-10.1.0.79-1739219200058/current, will proceed with Du for space computation calculation, 20:26:41.240 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage13950557850213491455/data/data2/current/BP-1681807949-10.1.0.79-1739219200058/current, will proceed with Du for space computation calculation, 20:26:41.291 WARN DirectoryScanner - dfs.datanode.directoryscan.throttle.limit.ms.per.sec set to value above 1000 ms/sec. Assuming default value of -1 20:26:41.478 ERROR DataNode - Command processor encountered interrupt and exit. 20:26:41.478 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:26:41.478 WARN DataNode - Ending command processor service for: Thread[Command processor,5,main] 20:26:41.478 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:26:41.478 WARN DataNode - Ending block pool service for: Block pool BP-1681807949-10.1.0.79-1739219200058 (Datanode Uuid 584d13bb-4d5c-4072-aae7-a74eb9372dc0) service to localhost/127.0.0.1:34603 20:26:41.480 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted 20:26:41.479 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted