| Test |
Duration |
Result |
| testAssemblyRegionReads[0](1:1-11, read 1:1-1001) |
0.001s |
passed |
| testBadReads[0](SAMFileHeader{VN=1.6, SO=coordinate}, read1 1:10-19, read2 1:9-18) |
0.004s |
passed |
| testBadReads[1](SAMFileHeader{VN=1.6, SO=coordinate}, read1 1:10-19, read2 2:9-18) |
0s |
passed |
| testBadReads[2](SAMFileHeader{VN=1.6, SO=coordinate}, read1 2:10-19, read2 1:9-18) |
0s |
passed |
| testConstructor |
0s |
passed |
| testCreatingAssemblyRegions[0](1:1-1, true, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[100](1:15990-15990, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[101](1:15990-15990, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[102](1:15990-15990, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[103](1:15990-15990, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[104](1:15990-15999, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[105](1:15990-15999, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[106](1:15990-15999, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[107](1:15990-15999, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[108](1:15990-15999, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[109](1:15990-15999, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[10](1:1-10, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[110](1:15990-15999, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[111](1:15990-15999, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[112](1:15990-16000, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[113](1:15990-16000, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[114](1:15990-16000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[115](1:15990-16000, false, 1) |
0.001s |
passed |
| testCreatingAssemblyRegions[116](1:15990-16000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[117](1:15990-16000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[118](1:15990-16000, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[119](1:15990-16000, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[11](1:1-10, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[120](1:15990-16000, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[121](1:15990-16000, false, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[122](1:15990-16000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[123](1:15990-16000, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[124](1:15990-16000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[125](1:15990-16000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[126](1:15990-16000, true, 100) |
0.001s |
passed |
| testCreatingAssemblyRegions[127](1:15990-16000, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[128](1:15999-15999, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[129](1:15999-15999, false, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[12](1:1-10, true, 10) |
0.001s |
passed |
| testCreatingAssemblyRegions[130](1:15999-15999, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[131](1:15999-15999, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[132](1:15999-15999, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[133](1:15999-15999, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[134](1:15999-15999, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[135](1:15999-15999, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[136](1:15999-16000, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[137](1:15999-16000, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[138](1:15999-16000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[139](1:15999-16000, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[13](1:1-10, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[140](1:15999-16000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[141](1:15999-16000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[142](1:15999-16000, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[143](1:15999-16000, false, 100) |
0.001s |
passed |
| testCreatingAssemblyRegions[144](1:15999-16000, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[145](1:15999-16000, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[146](1:15999-16000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[147](1:15999-16000, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[148](1:15999-16000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[149](1:15999-16000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[14](1:1-10, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[150](1:15999-16000, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[151](1:15999-16000, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[152](1:15999-16000, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[153](1:15999-16000, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[154](1:15999-16000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[155](1:15999-16000, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[156](1:15999-16000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[157](1:15999-16000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[158](1:15999-16000, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[159](1:15999-16000, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[15](1:1-10, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[16](1:1-100, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[17](1:1-100, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[18](1:1-100, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[19](1:1-100, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[1](1:1-1, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[20](1:1-100, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[21](1:1-100, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[22](1:1-100, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[23](1:1-100, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[24](1:1-1000, true, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[25](1:1-1000, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[26](1:1-1000, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[27](1:1-1000, false, 1) |
0.001s |
passed |
| testCreatingAssemblyRegions[28](1:1-1000, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[29](1:1-1000, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[2](1:1-1, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[30](1:1-1000, true, 100) |
0.001s |
passed |
| testCreatingAssemblyRegions[31](1:1-1000, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[32](1:10-10, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[33](1:10-10, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[34](1:10-10, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[35](1:10-10, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[36](1:10-10, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[37](1:10-10, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[38](1:10-10, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[39](1:10-10, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[3](1:1-1, false, 1) |
0.001s |
passed |
| testCreatingAssemblyRegions[40](1:10-19, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[41](1:10-19, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[42](1:10-19, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[43](1:10-19, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[44](1:10-19, true, 10) |
0.001s |
passed |
| testCreatingAssemblyRegions[45](1:10-19, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[46](1:10-19, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[47](1:10-19, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[48](1:10-109, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[49](1:10-109, false, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[4](1:1-1, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[50](1:10-109, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[51](1:10-109, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[52](1:10-109, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[53](1:10-109, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[54](1:10-109, true, 100) |
0.001s |
passed |
| testCreatingAssemblyRegions[55](1:10-109, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[56](1:10-1009, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[57](1:10-1009, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[58](1:10-1009, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[59](1:10-1009, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[5](1:1-1, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[60](1:10-1009, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[61](1:10-1009, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[62](1:10-1009, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[63](1:10-1009, false, 100) |
0.001s |
passed |
| testCreatingAssemblyRegions[64](1:100-100, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[65](1:100-100, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[66](1:100-100, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[67](1:100-100, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[68](1:100-100, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[69](1:100-100, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[6](1:1-1, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[70](1:100-100, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[71](1:100-100, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[72](1:100-109, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[73](1:100-109, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[74](1:100-109, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[75](1:100-109, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[76](1:100-109, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[77](1:100-109, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[78](1:100-109, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[79](1:100-109, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[7](1:1-1, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[80](1:100-199, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[81](1:100-199, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[82](1:100-199, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[83](1:100-199, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[84](1:100-199, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[85](1:100-199, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[86](1:100-199, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[87](1:100-199, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[88](1:100-1099, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[89](1:100-1099, false, 0) |
0s |
passed |
| testCreatingAssemblyRegions[8](1:1-10, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[90](1:100-1099, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[91](1:100-1099, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[92](1:100-1099, true, 10) |
0s |
passed |
| testCreatingAssemblyRegions[93](1:100-1099, false, 10) |
0s |
passed |
| testCreatingAssemblyRegions[94](1:100-1099, true, 100) |
0s |
passed |
| testCreatingAssemblyRegions[95](1:100-1099, false, 100) |
0s |
passed |
| testCreatingAssemblyRegions[96](1:15990-15990, true, 0) |
0s |
passed |
| testCreatingAssemblyRegions[97](1:15990-15990, false, 0) |
0.001s |
passed |
| testCreatingAssemblyRegions[98](1:15990-15990, true, 1) |
0s |
passed |
| testCreatingAssemblyRegions[99](1:15990-15990, false, 1) |
0s |
passed |
| testCreatingAssemblyRegions[9](1:1-10, false, 0) |
0s |
passed |
| testMismatchedReferenceAndRegion |
0.001s |
passed |
| testTrimAssemblyRegion[0](1:10-20, 10, 1:15-16, 1:15-16, 0) |
0.001s |
passed |
| testTrimAssemblyRegion[1](1:10-20, 10, 1:10-15, 1:10-15, 0) |
0s |
passed |
| testTrimAssemblyRegion[2](1:10-20, 10, 1:15-20, 1:15-20, 0) |
0s |
passed |
| testTrimAssemblyRegion[3](1:10-20, 10, 1:15-25, 1:15-20, 5) |
0s |
passed |
| testTrimAssemblyRegion[4](1:10-20, 10, 1:5-15, 1:10-15, 5) |
0s |
passed |
| testTrimAssemblyRegion[5](1:10-20, 10, 1:7-21, 1:10-20, 3) |
0s |
passed |
| testTrimAssemblyRegion[6](1:10-20, 10, 1:9-23, 1:10-20, 3) |
0s |
passed |
| testTrimAssemblyRegion[7](1:10-20, 10, 1:1-50, 1:10-20, 10) |
0s |
passed |
| testTrimAssemblyRegion[8](1:1-10, 10, 1:1-50, 1:1-10, 10) |
0s |
passed |