Class org.broadinstitute.hellbender.engine.ReferenceContextUnitTest

45

tests

0

failures

0

ignored

0.017s

duration

100%

successful

Tests

Test Duration Result
testCopyConstructor[0](1:11210-11220, 1:2650-2650, 0, 0) 0s passed
testCopyConstructor[1](1:11210-11220, 1:2650-2650, 3, 5) 0s passed
testCopyConstructor[2](1:11210-11220, 1:2640-2650, 0, 0) 0s passed
testCopyConstructor[3](1:11210-11220, 1:2640-2650, 3, 5) 0s passed
testCopyConstructor[4](1:11210-11220, 2:2650-2650, 3, 5) 0s passed
testCopyConstructor[5](1:11210-11220, 2:2650-2650, 0, 0) 0s passed
testCopyConstructor[6](1:11210-11220, 2:2650-2660, 3, 5) 0s passed
testCopyConstructor[7](1:11210-11220, 2:2650-2660, 0, 0) 0s passed
testDynamicallyChangingWindow 0.001s passed
testEmptyReferenceContext[0](org.broadinstitute.hellbender.engine.ReferenceContext@a57734e) 0s passed
testEmptyReferenceContext[1](org.broadinstitute.hellbender.engine.ReferenceContext@43aae476) 0s passed
testEmptyReferenceContext[2](org.broadinstitute.hellbender.engine.ReferenceContext@6f2f9ba4) 0s passed
testEmptyReferenceContext[3](org.broadinstitute.hellbender.engine.ReferenceContext@4be4680b) 0s passed
testGetBasesStaticWindow 0.001s passed
testGetKmerAround[0](1, 11211, 1, CGG) 0.001s passed
testGetKmerAround[1](1, 11219, 1, TGC) 0.001s passed
testGetKmerAround[2](1, 11217, 2, CTGTG) 0s passed
testIntervalNotInWindow 0.001s passed
testInvalidWindowHandlingAtConstruction[0](-1, 1) 0.001s passed
testInvalidWindowHandlingAtConstruction[1](1, -1) 0s passed
testInvalidWindowHandlingAtConstruction[2](-1, -1) 0.001s passed
testInvalidWindowHandlingPostConstruction[0](-1, 1) 0s passed
testInvalidWindowHandlingPostConstruction[1](1, -1) 0.001s passed
testInvalidWindowHandlingPostConstruction[2](-1, -1) 0s passed
testNullIntervalAndNonNullWindow 0s passed
testWindowedContextUsingIntervalObjects[0](1:1-3, 5, 5, 1:1-8, NNNNNNNN) 0s passed
testWindowedContextUsingIntervalObjects[1](1:11041-11045, 5, 5, 1:11036-11050, CAGGAGCAAAGTCGC) 0.001s passed
testWindowedContextUsingIntervalObjects[2](1:11210-11220, 3, 0, 1:11207-11220, TCACGGTGCTGTGC) 0s passed
testWindowedContextUsingIntervalObjects[3](2:9995-10005, 0, 3, 2:9995-10008, NNNNNNCGTATCCC) 0.001s passed
testWindowedContextUsingIntervalObjects[4](2:10005-10084, 3, 8, 2:10002-10092, GTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCCACACCCAC) 0s passed
testWindowedContextUsingIntervalObjects[5](2:15995-16000, 2, 5, 2:15993-16000, TGTGTCAG) 0.001s passed
testWindowedContextUsingIntervalObjects_nullWindow 0s passed
testWindowedContext[0](1:1-3, 5, 5, 1:1-8, NNNNNNNN) 0.001s passed
testWindowedContext[1](1:11041-11045, 5, 5, 1:11036-11050, CAGGAGCAAAGTCGC) 0s passed
testWindowedContext[2](1:11210-11220, 3, 0, 1:11207-11220, TCACGGTGCTGTGC) 0s passed
testWindowedContext[3](2:9995-10005, 0, 3, 2:9995-10008, NNNNNNCGTATCCC) 0s passed
testWindowedContext[4](2:10005-10084, 3, 8, 2:10002-10092, GTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCCACACCCAC) 0.001s passed
testWindowedContext[5](2:15995-16000, 2, 5, 2:15993-16000, TGTGTCAG) 0s passed
testWindowlessReferenceContext[0](1:1-3, NNN) 0s passed
testWindowlessReferenceContext[1](1:11041-11045, GCAAA) 0.001s passed
testWindowlessReferenceContext[2](1:11210-11220, CGGTGCTGTGC) 0s passed
testWindowlessReferenceContext[3](2:9995-10005, NNNNNNCGTAT) 0.001s passed
testWindowlessReferenceContext[4](2:10001-10080, CGTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCAC) 0.001s passed
testWindowlessReferenceContext[5](2:10005-10084, TCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCC) 0s passed
testWindowlessReferenceContext[6](2:15995-16000, TGTCAG) 0.001s passed