Class org.broadinstitute.hellbender.tools.copynumber.utils.genotyping.NaiveHeterozygousPileupGenotypingUtilsUnitTest

all > org.broadinstitute.hellbender.tools.copynumber.utils.genotyping > NaiveHeterozygousPileupGenotypingUtilsUnitTest
18

tests
0

failures
0

ignored
0.028s

duration
100%

successful

Tests

Test Duration Result
testGenotypeHets[0]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [true, true, true, false]) 0.011s passed
testGenotypeHets[10]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [true, true, false, false]) 0s passed
testGenotypeHets[11]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[12]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [true, false, false, false]) 0.001s passed
testGenotypeHets[13]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [true, true, false, false]) 0.001s passed
testGenotypeHets[14]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[15]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[16]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[17]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0s passed
testGenotypeHets[1]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [true, true, true, false]) 0.001s passed
testGenotypeHets[2]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [true, true, true, false]) 0.001s passed
testGenotypeHets[3]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [true, true, true, false]) 0.002s passed
testGenotypeHets[4]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [true, true, true, false]) 0.001s passed
testGenotypeHets[5]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[]}, [true, true, true, false]) 0.001s passed
testGenotypeHets[6]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[7]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[8]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1-low'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=3, altReadCount=2, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=2, altReadCount=3, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=4, altReadCount=1, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=5, altReadCount=0, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=1, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=0, altReadCount=5, refNucleotide=N, altNucleotide=N}]}], AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='normal'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=229, altReadCount=271, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=278, altReadCount=222, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=230, altReadCount=270, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=232, altReadCount=268, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=233, altReadCount=267, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=261, altReadCount=239, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=253, altReadCount=247, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=240, altReadCount=260, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=279, altReadCount=221, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=262, altReadCount=238, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=249, altReadCount=251, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=12, altReadCount=488, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr2:1-40]}, [false, false, false, false]) 0.001s passed
testGenotypeHets[9]([AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-1'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=236, altReadCount=264, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=270, altReadCount=230, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=263, altReadCount=237, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=226, altReadCount=274, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=259, altReadCount=241, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=254, altReadCount=246, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=251, altReadCount=249, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=255, altReadCount=245, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=216, altReadCount=284, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=250, altReadCount=250, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=484, altReadCount=16, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=4, altReadCount=496, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=9, altReadCount=491, refNucleotide=N, altNucleotide=N}]}, AbstractRecordCollection{metadata=SimpleSampleLocatableMetadata{sampleMetadata=SimpleSampleMetadata{sampleName='case-2'}, locatableMetadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}}, records=[AllelicCount{interval=chr1:1-1, refReadCount=252, altReadCount=248, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:2-2, refReadCount=215, altReadCount=285, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:3-3, refReadCount=267, altReadCount=233, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:4-4, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:5-5, refReadCount=248, altReadCount=252, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:6-6, refReadCount=245, altReadCount=255, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:7-7, refReadCount=235, altReadCount=265, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:8-8, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:9-9, refReadCount=258, altReadCount=242, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:10-10, refReadCount=244, altReadCount=256, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:11-11, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:12-12, refReadCount=489, altReadCount=11, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:13-13, refReadCount=492, altReadCount=8, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:14-14, refReadCount=496, altReadCount=4, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:15-15, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:16-16, refReadCount=11, altReadCount=489, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:17-17, refReadCount=10, altReadCount=490, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:18-18, refReadCount=13, altReadCount=487, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:19-19, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:20-20, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:21-21, refReadCount=243, altReadCount=257, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:22-22, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:23-23, refReadCount=247, altReadCount=253, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:24-24, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:25-25, refReadCount=264, altReadCount=236, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:26-26, refReadCount=242, altReadCount=258, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:27-27, refReadCount=256, altReadCount=244, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:28-28, refReadCount=237, altReadCount=263, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:29-29, refReadCount=246, altReadCount=254, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:30-30, refReadCount=234, altReadCount=266, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:31-31, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:32-32, refReadCount=488, altReadCount=12, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:33-33, refReadCount=493, altReadCount=7, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:34-34, refReadCount=495, altReadCount=5, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:35-35, refReadCount=491, altReadCount=9, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:36-36, refReadCount=7, altReadCount=493, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:37-37, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:38-38, refReadCount=14, altReadCount=486, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:39-39, refReadCount=8, altReadCount=492, refNucleotide=N, altNucleotide=N}, AllelicCount{interval=chr1:40-40, refReadCount=16, altReadCount=484, refNucleotide=N, altNucleotide=N}]}], null, AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:2 length:80 md5:b2bd64abe4a0e21898c9c4f8212e3872)}, records=[chr1:1-40]}, [true, false, false, false]) 0.002s passed