| Test |
Duration |
Result |
| testCreateFuncotations[0]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@72fb922c, [3, 4, 5, 6], [], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3: , 4: , 5: , 6:}, altAllele=G}], false) |
0.004s |
passed |
| testCreateFuncotations[10]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@1342c6e1, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866000, end=178866550, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866000, 178866550, this, is, test, 3]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], true) |
0.001s |
passed |
| testCreateFuncotations[11]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@7828111d, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866000, end=178866550, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866000, 178866550, this, is, test, 3]}], [org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@6628158c], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], true) |
0.001s |
passed |
| testCreateFuncotations[1]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@3087b35f, [3, 4, 5, 6], [null, null, null], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3: , 4: , 5: , 6:}, altAllele=G}], false) |
0.001s |
passed |
| testCreateFuncotations[2]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@19324eab, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], false) |
0.004s |
passed |
| testCreateFuncotations[3]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@654be52b, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], false) |
0.001s |
passed |
| testCreateFuncotations[4]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@72bb3f3e, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866000, end=178866550, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866000, 178866550, this, is, test, 3]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], false) |
0.001s |
passed |
| testCreateFuncotations[5]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@62808e8d, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866000, end=178866550, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866000, 178866550, this, is, test, 3]}], [org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@6628158c], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], false) |
0.001s |
passed |
| testCreateFuncotations[6]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@774f2d7f, [3, 4, 5, 6], [], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3: , 4: , 5: , 6:}, altAllele=G}], true) |
0.001s |
passed |
| testCreateFuncotations[7]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@6258ea84, [3, 4, 5, 6], [null, null, null], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3: , 4: , 5: , 6:}, altAllele=G}], true) |
0.001s |
passed |
| testCreateFuncotations[8]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@6a275836, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], true) |
0.001s |
passed |
| testCreateFuncotations[9]([VC /tmp/funcotatorTmpFolder12282509861524526/GRCh37.p13.chr3.fasta @ chr3:178866314 Q. of type=SNP alleles=[C*, G] attr={} GT=[] filters=, org.broadinstitute.hellbender.engine.ReferenceContext@3f41a1f3, [0, 1, 2, 3, 4, 5, 6], [XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866310, end=178866320, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866310, 178866320, this, is, a, test]}, XsvTableFeature{contigColumn=0, startColumn=1, endColumn=2, locationColumnRemoveIndiciesInOrder=[2, 1, 0], dataSourceName='LocatableXsvFuncotationFactoryUnitTest', contig='chr3', start=178866300, end=178866350, columnNames=[0, 1, 2, 3, 4, 5, 6], columnValues=[chr3, 178866300, 178866350, this, is, test, 2]}], [], [TableFuncotation{dataSourceName='LocatableXsvFuncotationFactoryUnitTest', fieldMap={3:this , 4:is , 5:a , 6:test}, altAllele=G}], true) |
0.001s |
passed |
| testGetName[0](null, LocatableXsv) |
0s |
passed |
| testGetName[1](TEST, TEST) |
0s |
passed |
| testGetName[2](4, 4) |
0s |
passed |
| testGetSupportedFuncotationFields |
0s |
passed |
| testNoSupportOfSegments |
0s |
passed |
| testRequiresFeatures |
0s |
passed |
| testSetSupportedFuncotationFields[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test.csv, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test.config, [XSV_LOCATABLE_TEST_NAME_Villain, XSV_LOCATABLE_TEST_NAME_test_val, XSV_LOCATABLE_TEST_NAME_Bond]) |
0.001s |
passed |
| testSetSupportedFuncotationFields[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test2.csv, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test2.config, [SECOND_XSV_NAME_Car_Maker, SECOND_XSV_NAME_Tire_Maker, SECOND_XSV_NAME_Parent_Company]) |
0s |
passed |
| testSetSupportedFuncotationFields[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test3.tsv, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_locatable_test3.config, [XSV_LOCATABLE_TEST_NAME_Villain, XSV_LOCATABLE_TEST_NAME_test_val, XSV_LOCATABLE_TEST_NAME_Bond]) |
0.001s |
passed |