Class org.broadinstitute.hellbender.tools.spark.pathseq.PSBuildReferenceTaxonomyUtilsTest
Tests
Test |
Duration |
Result |
testBuildEmptyTaxonomicTree |
0.002s |
passed |
testBuildReferenceNameToTaxMap |
0s |
passed |
testBuildTaxonomicTree |
0.001s |
passed |
testCloseReader |
0s |
passed |
testEmptyBuildTaxonomicTree |
0s |
passed |
testGetFileReaderGz |
0s |
passed |
testGetTarGzReaderBadArchivedFile |
0s |
passed |
testGetTarGzReaderBadTar |
0s |
passed |
testParseCatalog |
0.002s |
passed |
testParseNamesFile |
0s |
passed |
testParseNodesFile |
0s |
passed |
testParseReferenceRecords |
0s |
passed |
testRemoveUnusedTaxIds |
0s |
passed |
Standard error
21:25:23.594 WARN PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5
21:25:23.595 WARN PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5