| Test |
Duration |
Result |
| testClipAlignmentInterval[0](null, 10, true, null, class java.lang.IllegalArgumentException) |
0s |
passed |
| testClipAlignmentInterval[1](chr1,202317371,-,1393H50M1085H,60,1,45, -1, true, null, class java.lang.IllegalArgumentException) |
0s |
passed |
| testClipAlignmentInterval[2](chr1,202317371,-,1393H50M1085H,60,1,45, 51, true, null, class java.lang.IllegalArgumentException) |
0s |
passed |
| testClipAlignmentInterval[3](chr1,202317371,-,1393H50M1085H,60,1,45, 18, false, chr1,202317371,-,1393H32M18S1085H,60, null) |
0.001s |
passed |
| testClipAlignmentInterval[4](chr5,33757389,+,418H78M39I123M180H,60,41,136, 79, false, chr5,33757467,+,418H117S123M180H,60, null) |
0s |
passed |
| testClipAlignmentInterval[5](chr5,33757467,+,418H117S123M180H,60, 101, true, chr5,33757467,+,418H117S22M101S180H,60, null) |
0s |
passed |
| testClipAlignmentInterval[6](chr12,31118319,-,285S327M1D118M1D91M178S,60,51,257, 53, true, chr12,31118372,-,338S274M1D118M1D91M178S,60, null) |
0s |
passed |
| testComputeNewRefSpanAndCigar[0](chr1,175417007,+,13H68M394H,60,0,68, 31, true, chr1:175417007-175417043, 13H37M31S394H) |
0s |
passed |
| testComputeNewRefSpanAndCigar[10](chr5,33757467,+,418H117S123M180H,60, 101, true, chr5:33757467-33757488, 418H117S22M101S180H) |
0.001s |
passed |
| testComputeNewRefSpanAndCigar[1](chr2,122612655,-,138H97M8H,60,0,97, 4, true, chr2:122612659-122612751, 8H93M4S138H) |
0s |
passed |
| testComputeNewRefSpanAndCigar[2](chr6,66782514,-,166M31S,60,3,151, 4, false, chr6:66782514-66782675, 35S162M) |
0s |
passed |
| testComputeNewRefSpanAndCigar[3](chr2,91421528,+,270H207M,40,12,147, 32, false, chr2:91421560-91421734, 270H32S175M) |
0s |
passed |
| testComputeNewRefSpanAndCigar[4](chr2,128791173,+,1190M4D53M2I26M2I31M2D28M1422S,60,13,1239, 28, true, chr2:128791173-128792476, 1190M4D53M2I26M2I31M1450S) |
0s |
passed |
| testComputeNewRefSpanAndCigar[5](chr2,128791173,+,1190M4D53M2I26M2I31M2I28M1422S,60,13,1239, 28, true, chr2:128791173-128792476, 1190M4D53M2I26M2I31M1452S) |
0s |
passed |
| testComputeNewRefSpanAndCigar[6](chr2,128791173,+,1190M4D53M2I26M2I31M2D28M1422S,60,13,1239, 1190, false, chr2:128792367-128792506, 1190S53M2I26M2I31M2D28M1422S) |
0s |
passed |
| testComputeNewRefSpanAndCigar[7](chr2,128791173,+,1190M4I53M2I26M2I31M2I28M1422S,60,13,1239, 1190, false, chr2:128792363-128792500, 1194S53M2I26M2I31M2I28M1422S) |
0s |
passed |
| testComputeNewRefSpanAndCigar[8](chr20,38653045,-,1431S29M3I106M44I89M1782S,60,59,85, 89, false, chr20:38653045-38653179, 1915S106M3I29M1431S) |
0s |
passed |
| testComputeNewRefSpanAndCigar[9](chr5,33757389,+,418H78M39I123M180H,60,41,136, 79, false, chr5:33757467-33757589, 418H117S123M180H) |
0s |
passed |
| testExtractCigar[0](chr1,82666357,+,68S122M5D282M,60,11,353, [68S], [122M, 5D, 282M], []) |
0s |
passed |
| testExtractCigar[1](chr3,61792401,+,42H48M382H,46,1,43, [42H], [48M], [382H]) |
0s |
passed |
| testExtractCigar[2](chrY,26303624,+,48M424H,0,2,38, [], [48M], [424H]) |
0s |
passed |
| testGappedAlignmentBreaker_Complex |
0s |
passed |
| testGappedAlignmentBreaker_ExpectException |
0.001s |
passed |
| testGappedAlignmentBreaker_GapSizeSensitivity |
0s |
passed |
| testGappedAlignmentBreaker_HardAndSoftClip |
0s |
passed |
| testGappedAlignmentBreaker_NegativeStrand |
0s |
passed |
| testGappedAlignmentBreaker_NoLongerExpectException |
0s |
passed |
| testGappedAlignmentBreaker_OneDeletion |
0s |
passed |
| testGappedAlignmentBreaker_OneInsertion |
0s |
passed |
| testGappedAlignmentBreaker_TerminalInsertionNeighboringClippings |
0s |
passed |
| testGappedAlignmentBreaker_TerminalInsertionOperatorToSoftClip |
0.001s |
passed |