| Test |
Duration |
Result |
| testDeOverlapAlignments[0]([chr3,15737523,-,1425H377M1D726M,60,4,1071, chr1,202317371,-,1393H50M1085H,60,1,45, chr3,15736242,-,1282M1246S,60,0,1282], [chr3,15737523,-,1425H377M1D726M,60,4,1071, chr1,202317371,-,1393H32M18S1085H,60, chr3,15736242,-,1282M1246S,60,0,1282]) |
0s |
passed |
| testDeOverlapAlignments[1]([chr3,44700691,-,1898H58M2D292M12D387M1I161M,60,26,780, chr3,44699487,+,786S1319M692S,60,4,1299, chr3,44698789,-,530M6D217M2I58M1990H,60,19,710], [chr3,44700691,-,1898H58M2D292M12D387M1I161M,60,26,780, chr3,44699600,+,899S1091M807S,60, chr3,44698789,-,530M6D217M2I58M1990H,60,19,710]) |
0s |
passed |
| testDeOverlapAlignments[2]([chr21,42282466,+,1257M734S,60, chr21,42283784,+,1257S114M1I60M1D63M1I28M467S,60, chr21,42284027,+,1258H733M,60,1,728], [chr21,42282466,+,1257M734S,60, chr21,42284027,+,1258H733M,60,1,728]) |
0s |
passed |
| testRemoveOverlap[0](chr1,100001,-,100M,60,0,100, chr1,100041,+,30M,30,5,26, 30, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, null, class java.lang.IllegalArgumentException) |
0.003s |
passed |
| testRemoveOverlap[10](chr3,15737523,-,1425H377M1D726M,60,4,1071, chr1,202317371,-,1393H50M1085H,60,1,45, 18, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, true, (chr3,15737541,-,1425H18S359M1D726M,60,chr1,202317371,-,1393H50M1085H,60,1,45), null) |
0.003s |
passed |
| testRemoveOverlap[1](chr3,15737523,-,1425H377M1D726M,60,4,1071, chr3,15736242,-,1282M1246S,60,0,1282, 0, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, null, class java.lang.IllegalArgumentException) |
0.003s |
passed |
| testRemoveOverlap[2](chr10,6055203,+,221M1064H,60,0,221, chr10,6055906,+,205S1080M,60,0,1080, 16, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr10,6055203,+,205M16S1064H,60,chr10,6055906,+,205S1080M,60,0,1080), null) |
0.003s |
passed |
| testRemoveOverlap[3](chr7,5803446,-,1046H558M,60,2,548, chr7,5802154,-,1009M1D120M475S,60,4,1097, 123, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr7,5803446,-,1046H558M,60,2,548,chr7,5802154,-,1006M598S,60), null) |
0.002s |
passed |
| testRemoveOverlap[4](chr1,13235227,+,570M151S,60,7,535, chr1,13384970,-,218M503H,60,1,213, 67, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr1,13235227,+,503M218S,60,chr1,13384970,-,218M503H,60,1,213), null) |
0.003s |
passed |
| testRemoveOverlap[5](chr1,81195731,+,143M145H,60,1,138, chr1,81194519,-,148M140S,60,0,148, 3, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr1,81195731,+,143M145H,60,1,138,chr1,81194519,-,145M143S,60), null) |
0.003s |
passed |
| testRemoveOverlap[6](chr1,34802227,-,149H126M,60,0,126, chr1,54510617,+,75S200M,60,0,200, 51, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr1,34802227,-,149H126M,60,0,126,chr1,54510668,+,126S149M,60), null) |
0.002s |
passed |
| testRemoveOverlap[7](chr10,73660151,-,140S145M,60,0,145, chr10,73659956,+,143H142M,60,0,142, 2, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chr10,73660153,-,142S143M,60,chr10,73659956,+,143H142M,60,0,142), null) |
0.003s |
passed |
| testRemoveOverlap[8](chrUn_GL000195v1,49574,-,125S270M,48,5,245, chrUn_GL000195v1,49512,+,264H131M,48,1,126, 6, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chrUn_GL000195v1,49580,-,131S264M,48,chrUn_GL000195v1,49512,+,264H131M,48,1,126), null) |
0.004s |
passed |
| testRemoveOverlap[9](chrX,52729025,+,120M249H,46,1,115, chrX,52729135,-,261M108S,60,0,261, 12, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), false, false, (chrX,52729025,+,120M249H,46,1,115,chrX,52729135,-,249M120S,60), null) |
0.002s |
passed |
| testTurnIntoVariantContext |
0.003s |
passed |
| testYieldOverlapToAlignmentTwo[0](chr1,100001,-,100M,60,0,100, chr1,100041,+,30M,30,5,26, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), class java.lang.IllegalArgumentException) |
0.002s |
passed |
| testYieldOverlapToAlignmentTwo[10](chrUn_GL000195v1,49574,-,125S270M,48,5,245, chrUn_GL000195v1,49512,+,264H131M,48,1,126, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |
| testYieldOverlapToAlignmentTwo[11](chrX,52729025,+,120M249H,46,1,115, chrX,52729135,-,261M108S,60,0,261, false, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |
| testYieldOverlapToAlignmentTwo[1](chr1,100041,+,30M,30,5,26, chr1,100001,-,100M,60,0,100, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), class java.lang.IllegalArgumentException) |
0.002s |
passed |
| testYieldOverlapToAlignmentTwo[2](chr1,202317371,-,1393H50M1085H,60,1,45, chr3,15736242,-,1282M1246S,60,0,1282, true, null, class java.lang.IllegalArgumentException) |
0s |
passed |
| testYieldOverlapToAlignmentTwo[3](chr3,15737523,-,1425H377M1D726M,60,4,1071, chr1,202317371,-,1393H50M1085H,60,1,45, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.002s |
passed |
| testYieldOverlapToAlignmentTwo[4](chr10,6055203,+,221M1064H,60,0,221, chr10,6055906,+,205S1080M,60,0,1080, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |
| testYieldOverlapToAlignmentTwo[5](chr7,5803446,-,1046H558M,60,2,548, chr7,5802154,-,1009M1D120M475S,60,4,1097, false, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |
| testYieldOverlapToAlignmentTwo[6](chr1,13235227,+,570M151S,60,7,535, chr1,13384970,-,218M503H,60,1,213, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |
| testYieldOverlapToAlignmentTwo[7](chr1,81195731,+,143M145H,60,1,138, chr1,81194519,-,148M140S,60,0,148, false, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0s |
passed |
| testYieldOverlapToAlignmentTwo[8](chr1,34802227,-,149H126M,60,0,126, chr1,54510617,+,75S200M,60,0,200, false, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0s |
passed |
| testYieldOverlapToAlignmentTwo[9](chr10,73660151,-,140S145M,60,0,145, chr10,73659956,+,143H142M,60,0,142, true, SAMSequenceDictionary:( sequences:3366 length:3217346917 md5:5de1aef8e9e3be34ae7696779a4791c7), null) |
0.001s |
passed |