| Test |
Duration |
Result |
| testComposeAlternativeHaplotype[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[100]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[101]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[102]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[103]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[104]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[105]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[106]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[107]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[108]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[109]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.006s |
passed |
| testComposeAlternativeHaplotype[10]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[110]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[111]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[112]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[113]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[114]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[115]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[116]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[11]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.014s |
passed |
| testComposeAlternativeHaplotype[12]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[13]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[14]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[15]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[16]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[17]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[18]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[19]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[20]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[21]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[22]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[23]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[24]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[25]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[26]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[27]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[28]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[29]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[2]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[30]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[31]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[32]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[33]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[34]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[35]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[36]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[37]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[38]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[39]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[3]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[40]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[41]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[42]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.010s |
passed |
| testComposeAlternativeHaplotype[43]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[44]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[45]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.005s |
passed |
| testComposeAlternativeHaplotype[46]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[47]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[48]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[49]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[4]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[50]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[51]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.010s |
passed |
| testComposeAlternativeHaplotype[52]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.005s |
passed |
| testComposeAlternativeHaplotype[53]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.005s |
passed |
| testComposeAlternativeHaplotype[54]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[55]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[56]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[57]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[58]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.005s |
passed |
| testComposeAlternativeHaplotype[59]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[5]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[60]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.005s |
passed |
| testComposeAlternativeHaplotype[61]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[62]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[63]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[64]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[65]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[66]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[67]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[68]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[69]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[6]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[70]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[71]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[72]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[73]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[74]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[75]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[76]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[77]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[78]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[79]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[7]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[80]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[81]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[82]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[83]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[84]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[85]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[86]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[87]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[88]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[89]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[8]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[90]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[91]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.003s |
passed |
| testComposeAlternativeHaplotype[92]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[93]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[94]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[95]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[96]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[97]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.004s |
passed |
| testComposeAlternativeHaplotype[98]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.001s |
passed |
| testComposeAlternativeHaplotype[99]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeAlternativeHaplotype[9]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@7b0dc526) |
0.002s |
passed |
| testComposeReferenceHaplotype[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0s |
passed |
| testComposeReferenceHaplotype[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0s |
passed |
| testComposeReferenceHaplotype[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.004s |
passed |
| testComposeReferenceHaplotype[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.004s |
passed |
| testComposeReferenceHaplotype[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.003s |
passed |
| testComposeReferenceHaplotype[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.015s |
passed |
| testComposeReferenceHaplotype[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.008s |
passed |
| testComposeReferenceHaplotype[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.011s |
passed |
| testComposeReferenceHaplotype[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0s |
passed |
| testComposeReferenceHaplotype[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.019s |
passed |
| testComposeReferenceHaplotype[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.002s |
passed |
| testComposeReferenceHaplotype[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testComposeReferenceHaplotype[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@51acd052) |
0.001s |
passed |
| testContigNames[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.010s |
passed |
| testContigNames[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0.001s |
passed |
| testContigNames[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testContigNames[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@254d2871) |
0s |
passed |
| testCreate[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.004s |
passed |
| testCreate[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.004s |
passed |
| testCreate[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.003s |
passed |
| testCreate[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testCreate[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0s |
passed |
| testCreate[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@3491e86e) |
0.001s |
passed |
| testEnd[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0.001s |
passed |
| testEnd[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testEnd[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@259fabf7) |
0s |
passed |
| testGetBreakPoints[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[100]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[101]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[102]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[103]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[104]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[105]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[106]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[107]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[108]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[109]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[10]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[110]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[111]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[112]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[113]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[114]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[115]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[116]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[11]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[12]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[13]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[14]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[15]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[16]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[17]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[18]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[19]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[20]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[21]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[22]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[23]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[24]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[25]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[26]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[27]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[28]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[29]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[2]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[30]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[31]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[32]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[33]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[34]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[35]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[36]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[37]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[38]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[39]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[3]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[40]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[41]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[42]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[43]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[44]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[45]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[46]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[47]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[48]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[49]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[4]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[50]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[51]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[52]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[53]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[54]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[55]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[56]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[57]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[58]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[59]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[5]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[60]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[61]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[62]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[63]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[64]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[65]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[66]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[67]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[68]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[69]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[6]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[70]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[71]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[72]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[73]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[74]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[75]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[76]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[77]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[78]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[79]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[7]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[80]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[81]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[82]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[83]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[84]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[85]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.002s |
passed |
| testGetBreakPoints[86]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[87]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[88]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[89]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[8]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[90]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[91]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[92]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0s |
passed |
| testGetBreakPoints[93]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[94]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[95]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[96]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[97]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[98]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[99]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testGetBreakPoints[9]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@c541518) |
0.001s |
passed |
| testInsertedSequence[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0.001s |
passed |
| testInsertedSequence[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testInsertedSequence[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@49e01f04) |
0s |
passed |
| testLength[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0.001s |
passed |
| testLength[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testLength[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@6f2530db) |
0s |
passed |
| testTestOutputFileContent[0]([VC Unknown @ 21:43350116-43353485 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[229, 417], CTG_NAMES=[asm000000:tig00006, asm000001:tig00001], END=43353485, EXTERNAL_CNV_CALLS=CNV_21_43350200_43353400:1:80, HOMLEN=6, HOMSEQ=GAGGAA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=417, READ_PAIR_SUPPORT=23, SPLIT_READ_SUPPORT=8, SVLEN=-3369, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@2f1e14cf, src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/outputs/hg19_DEL.vcf) |
0.006s |
passed |
| testTestOutputFileContent[1]([VC Unknown @ 21:27374151-27374706 Q. of type=SYMBOLIC alleles=[A*, <INV>] attr={ALIGN_LENGTHS=541, CTG_NAMES=asm000001:tig00009, END=27374706, HOMLEN=7, HOMSEQ=GGATCCA, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=541, SVLEN=555, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@5897c246, src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/outputs/hg19_INV.vcf) |
0.001s |
passed |
| testTestOutputFileContent[2]([VC Unknown @ 21:27374158-27374700 Q. of type=SYMBOLIC alleles=[A*, <INV>] attr={ALIGN_LENGTHS=518, CTG_NAMES=asm000001:tig00009, END=27374700, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=518, SVLEN=542, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@5897c246, src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/outputs/hg19_INV.vcf) |
0.001s |
passed |
| testType[0]([VC Unknown @ chr20:420661 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=432, CTG_NAMES=asm022537:tig00001, END=420661, HQ_MAPPINGS=1, INSSEQ=CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=432, SVLEN=61, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[100]([VC Unknown @ chr20:54131499 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=100, CTG_NAMES=asm023210:tig00019, END=54131499, HQ_MAPPINGS=1, INSSEQ=TTGCTGGGGTATGTACCCAATCATACCCCATGGGTATGGTACCCAATACCATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=100, SVLEN=53, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[101]([VC Unknown @ chr20:54162513 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=130, CTG_NAMES=asm023212:tig00004, END=54162513, HQ_MAPPINGS=1, INSSEQ=GTATGAGGCCGTGCGCGGAGGCACCGTGGTGTCTAGTATGAGGCCGTGCGCTGAGGCACCGTGGTATAGATGCTGTGCGCGGAGGCACCGTGGCGTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=130, SVLEN=99, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[102]([VC Unknown @ chr20:54690812 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=996, CTG_NAMES=asm023213:tig00000, END=54690812, HQ_MAPPINGS=1, INSSEQ=TCTATATATCTATATATATCTATATATAGATATATAGATATATATCTATATATATATATATATCTATATATC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=996, SVLEN=72, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[103]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[52, 52], CTG_NAMES=[asm011429:tig00003, asm023214:tig00004], END=54849614, HQ_MAPPINGS=2, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAATGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=[126_171_chr14:58474127-58474172_-_125H46M122H_60_1, 238_283_chr14:58474127-58474172_-_237H46M122H_60_1], MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=52, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[104]([VC Unknown @ chr20:54849491-54849614 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=66, CTG_NAMES=asm011429:tig00011, END=54849614, HQ_MAPPINGS=1, INSSEQ=CAAATCTCATGTTGAAATGTAATCCCCAGTGTTGGAGGGGGGCAGATCCCTCATGAGTGGCTTGGTGCCCTTCCCATGGTAATGAGTGAGTTCTTGCTCTGTTAGTTCATGAGAGAGCTGATTGTTTAAAGGAGTCTG, INSSEQ_MAP=198_242_chr19:55638665-55638709_-_197H45M169H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=66, SVLEN=-123, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[105]([VC Unknown @ chr20:54942775 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1033, CTG_NAMES=asm023216:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:54942776-54942783, DUP_SEQ_CIGARS=[8M, 8M], END=54942775, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGTACTCTATTATGTTACATTTTTTCATGATACATCTACTTTATGTGTCTATTTCCATGAATATAGACCTATATTAATGACTGTATACCAGTCATTACATTCATTGAAAAAATTATTTTAACCAATGATTTATTGATAGATTTATTTATCTTTTGAACAACAATACAATGAAAATTTCTATATGTGCATTTTTGGGCACTGCCATTTTATTTCCTTAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1033, SVLEN=227, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[106]([VC Unknown @ chr20:55586267 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023220:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55586268-55586339, DUP_SEQ_CIGARS=[17M2D53M, 72M], END=55586267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCATATGATCATATATATCATATATGATCATATATATCATATGATCATATATATC, INSSEQ_MAP=194_280_chr20:55586268-55586339_+_193H38M15I34M112H_7_15, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=127, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[107]([VC Unknown @ chr20:55625224-55625275 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=197, CTG_NAMES=asm023221:tig00014, END=55625275, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=197, SVLEN=-51, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[108]([VC Unknown @ chr20:55625485 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=61, CTG_NAMES=asm023221:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55625486-55625486, DUP_SEQ_CIGARS=[1M, 1M], END=55625485, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ATAAATATAATATACTTATTTAAATATATTTAAATAAATATATTAAATATTTAAATATAATTACTTAAATATATATTTAAAATATTTAATAAACATATATTTAAATATTTATTTAATATTTAAATATTAAATATATATAATTAATATAATTATATATATATTATATACTATATATTATATATACTATATAATATACTATATATAGTATACTAATATAATATACTATATATACTATATATAATATACTATATATAGTATATATAGTATAGTATACTATAATATACTATATTATATAATATAGTATACT, INSSEQ_MAP=109_145_chr5:86921169-86921205_-_108H37M701H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=61, SVLEN=308, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[109]([VC Unknown @ chr20:55625544-55625659 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=131, CTG_NAMES=asm023221:tig00002, END=55625659, HOMLEN=112, HOMSEQ=TATACTATAGTATACAGTATACTATATACTATAGTATAGTATATAGTATACTATACTATAGTATACTATACTATAGTATAGTATATAGTATACTGTATACTATAGTATAGTA, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=131, SVLEN=115, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[10]([VC Unknown @ chr20:5644313 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=112, CTG_NAMES=asm022591:tig00018, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:5644314-5644364, DUP_SEQ_CIGARS=[51M, 51M], END=5644313, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACCCTCTCCATTACCACCCCACCTCCTTACCCT, INSSEQ_MAP=90_140_chr20:5644314-5644364_+_89H51M143H_60_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=112, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[110]([VC Unknown @ chr20:55859554-55865560 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[232, 86], CTG_NAMES=[asm023222:tig00003, asm023223:tig00010], END=55865560, HOMLEN=13, HOMSEQ=AATAAATTTGTGG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=232, SVLEN=-6006, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[111]([VC Unknown @ chr20:55888164-55888481 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm023224:tig00011, END=55888481, HOMLEN=14, HOMSEQ=TGGGCATTCTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-317, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[112]([VC Unknown @ chr20:55916053 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023225:tig00005, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:55916054-55916055, DUP_SEQ_CIGARS=[2M, 2M], END=55916053, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAACAAGCTATAGTTCATCTGTACCTCATTTTTTAAAATGGTCAGGTTCAAAGCTGCTATGCAATACTGGGGCGCAACTAAGTATCATTGAAATGATTTGTCTTTTTTTATTTTGAGTCAACCTGAAGTGACAATATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=144, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[113]([VC Unknown @ chr20:56365905-56366003 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023228:tig00014, END=56366003, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=-98, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[114]([VC Unknown @ chr20:58196811 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm023246:tig00000, END=58196811, HQ_MAPPINGS=1, INSSEQ=ACACACCCACACACACACACACACACACACACACACACACACACACACACACACACCG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[115]([VC Unknown @ chr20:58695020-58695228 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023249:tig00002, END=58695228, HQ_MAPPINGS=1, INSSEQ=TGCGTGTGTATGAGTGCTGGTGTGTGCATGAATGGTGTGTGTGGTGTGTTTATGTGTGGTGTGTGTTGCTGTGTGAGTGCTGGTGTGTGCATGAGTGGCGTGTGTGTGGTGTGTGTTGCTGTGTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTATGTGTGGTGTGTGTTGCTGTGTATGAGTGTTGGTGTGTGCATGAGTGGTGTGTGTGTGCTGTGTGTACGTGTGTGTGTTGCTGTGTGTGTGTTTGAGTGCTGGTGTGTGCATGAGTGGTGTGTGTGTGGTGTGTGTGGTGTCTGTTGCTGTGTGTGTTTGAGTTCTGGTATGTGCATGAGTGGTGTGTGTGTGTGCTGTGTGTGTGGTGTGTTGCTG, INSSEQ_MAP=[207_305_chr20:58695237-58695339_+_206H35M4D64M459H_31_8, 299_362_chr20:58695016-58695079_+_298H64M402H_53_5, 392_499_chr20:58695229-58695331_+_391H38M5I65M265H_3_12, 457_563_chr20:58695229-58695328_+_456H49M7I51M201H_55_13, 592_701_chr20:58695237-58695339_+_591H33M7I70M63H_40_14], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=-208, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[116]([VC Unknown @ chr20:59442200 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=1086, CTG_NAMES=asm023257:tig00000, END=59442200, HQ_MAPPINGS=1, INSSEQ=CTTCCCCTCCCCCCTCCCTCCCCTCCCTTCCCTCCCTCCTTCCTTCCTTCTTCCCTCCCTCCCTCCCTTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1086, SVLEN=70, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[117]([VC Unknown @ chr20:59675085-59675141 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=115, CTG_NAMES=asm023259:tig00002, END=59675141, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=115, SVLEN=-56, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[118]([VC Unknown @ chr20:60307142-60307268 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=122, CTG_NAMES=asm023266:tig00011, END=60307268, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=122, SVLEN=-126, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[119]([VC Unknown @ chr20:60703055 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=134, CTG_NAMES=asm023270:tig00001, END=60703055, HQ_MAPPINGS=1, INSSEQ=TTCTTTCTTTCTTTCTTTTCTTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=134, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[11]([VC Unknown @ chr20:5962341-5962670 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm022596:tig00002, END=5962670, HOMLEN=13, HOMSEQ=GCCTTCATTTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[120]([VC Unknown @ chr20:60764335 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=332, CTG_NAMES=asm023271:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:60764336-60764342, DUP_SEQ_CIGARS=[7M, 7M], END=60764335, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TCACACACACCTACACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACATACACATTCACACACCTGTACACACATTCACACTCACATATACACACATCCACACACACCTACACACATATATACATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=332, SVLEN=180, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[121]([VC Unknown @ chr20:60764343-60764344 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=56, CTG_NAMES=asm023271:tig00005, END=60764344, HQ_MAPPINGS=1, INSSEQ=CACACACCTACACACATTTGCACTTAATGTCACACACAGACCTATACACCCATTCACCCACTCACATTTGCACACTCTATCACACACACCTATACACATTCTCTCACACACCTGTACACACATTCACACTCGCATATACACACATCCACACACACCTACACACACATATATACATTCACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=56, SVLEN=-1, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[122]([VC Unknown @ chr20:60933130-60934837 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[143, 143], CTG_NAMES=[asm023273:tig00004, asm023274:tig00009], END=60934837, HQ_MAPPINGS=2, INSSEQ=TACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=143, SVLEN=-1707, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[123]([VC Unknown @ chr20:61142535 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=135, CTG_NAMES=asm023280:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61142536-61142551, DUP_SEQ_CIGARS=[16M, 16M], END=61142535, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACGACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCCGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC, INSSEQ_MAP=134_441_chr6:138626610-138626917_+_133H308M309H_0_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=135, SVLEN=318, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[124]([VC Unknown @ chr20:61156166-61156226 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=104, CTG_NAMES=asm023282:tig00014, END=61156226, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=104, SVLEN=-60, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[125]([VC Unknown @ chr20:61176897 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=444, CTG_NAMES=asm023283:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61176898-61176900, DUP_SEQ_CIGARS=[3M, 3M], END=61176897, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG, INSSEQ_MAP=416_630_chr3:128596981-128597196_-_415H93M1D122M1128H_48_11, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=444, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[126]([VC Unknown @ chr20:61229617-61229667 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=684, CTG_NAMES=asm023285:tig00002, END=61229667, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=684, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[127]([VC Unknown @ chr20:61337291 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=938, CTG_NAMES=asm023287:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61337292-61337302, DUP_SEQ_CIGARS=[11M, 11M], END=61337291, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GATAATGATGGTGGTATGATGATGTGGATGGTAATGGTGATGATAACAGTGGATAATGATGGTAATGCAAGTGATGATATTGATGATGATGGTGATGACAGTGCTGATAATGATCATAATGGTGATGATGATGATGGTGATTATTGTAATAGTGATGACAGTGATGATGATAATGATGGTGATAAGAGTGGATAATGATAATAATGATGATGGTGATTTTAATAGTGATGATGATGTTAAGATGATTATGGTGATGATGATAGTGATGATGATGGTGATGATAACAGTGGATACTGATAATG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=938, SVLEN=313, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[128]([VC Unknown @ chr20:61353605-61353629 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023289:tig00000, END=61353629, HQ_MAPPINGS=1, INSSEQ=GCCTTCCTCCCCCTCCTCCCCATCTTTCTCCCCTTCCCCCTCCCCCCTCCTCTGTCTTCCCCCTACTCCTCCCCTTCTCCCTCCCCCTTCTCCCCCTCTTCCTCCCCTTCCCCCCTCCTCTTCCCCCCTCCTCCTCCTCCCCTTCCCCCTCCCATTACCCCTTCTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=-24, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[129]([VC Unknown @ chr20:61375462 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=358, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375463-61375819, END=61375462, EXPANSION=true, HOMLEN=283, HOMSEQ=GTGATGGTGTGGTTTGTTGATGGTAGTGTGATGCTCTTGGTGCTGGTGGTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGATGATGGTGGTGCTGGTGGTGGTCATAGCACTGGTGGTGATGGTATGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGCTGGTGGTGATGATAGTGGGGTTTATTGATGGTAGTGTGATGGTCTTGGTGGTGCTGATAATGGTGTGGTTTGTTGATGATAGTGTGATGGTCTTGGTGGTGGTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=358, SVLEN=357, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[12]([VC Unknown @ chr20:6063349-6063364 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm030171:tig00000, END=6063364, HQ_MAPPINGS=1, INSSEQ=CCAGCCTGGGTGATGCAGCGAGACCCTGTCTTAGAAAAGCAAAACAACAACAACAACAACAACAACAACAACCAAAGGAAGACACTACATGGATGACTTTGAAGATAGAGAAAGGACCACAGAATGTAAGGAATGCAGTTCTCAAACTGGAAGAAGCAAGGAAGTGGATGGGGTCCTCTGGAGGATATGTGGCCCTGGTGACACCTTGACTTTGGTCCAGCGACACTGATTTCAGGATTCTCCCCTCCAGAACTTAGAGACAATAAATGTGTATGTCGTTGTTGTTATTACTTTTATTGTGGTAAAATATATATGACGTAATATTTATCATTTAAACCATTTGTCAAGTGTGCACTCCAGTGGCATTAAATATATTCACAATGATATTGGGTAACCATCACCACTATCTATACCTGAAACATTTTCATCATCCCCAACAAAATCTCTGTACTCATGAAACAATAACTCCCTCTTTCCCCCAACCCTTGGTAACCTCTGTTCTACTTTCTGTCTCTATATTTGCCTATTCTAGGTACCTCCTATAAGTGGAATCATACAATATTTGTCCTTTGGTCTCTGGCTTGACTAAGCATAATTTTCAAGGTTGATCCATGTGGCAGCACGTATCAAGATGTTATTCCTTTTTACGGCTGAACAATATTGTGTTGGTTCATTCTCACACTGCTATAAAGACATACCTGAGACTGGGTAATTTACAAAGAAAAAGGTTTAGTTGGCTCATCGTTCCACAGGCTGTACAGGAAGCATGACTGAGGAGGCCTCAGGGAGCTTTTAATCAAGGTGGAAGGCAAAGGCGGAGCAACCATCTTCACACGACTGGAGCAGGAGGAAGAGAGAGAGCGGGGAGGTGTCACACACCTCCAAACAACCAGATCTCATGAGAACTCAATCATGAGAACAGCACCAAAGAGGGAAATCCGCCCCCATGATCCAATCACCTCCCACCAGGTCCCACCTTCAATATTGAGGATTACAACTTGACATGGGATTTGGGTAGGGACACAAATCCAAACCATATCAAATATTGTGGGTTGGTTTCAGCCACCAAATTTGTGATAATTTGTTCCAGCAGCCACGTGAGGGATGATAGGAAAGAAGGCATGAAGGAGGATTCCCAGGCTTTTGGCTGAGAACTGGCTGGATTGAGATGCCATTTCCTGGGATAGAGGGATCTGAGAGAGCAACCTATGAGGGGTAGGGAAACCACAGGCTCGTTCTGGCCATGTGAAGTTTAAGATGTCTGTCAGGCCTCCAAGGAAA, INSSEQ_MAP=[1057_1156_chrX:5355041-5355140_+_1056H100M386H_3_11, 787_843_chr9:78107278-78107334_-_786H57M699H_0_1], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=-15, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[130]([VC Unknown @ chr20:61375649 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=430, CTG_NAMES=asm023290:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61375650-61375892, END=61375649, EXPANSION=true, HOMLEN=211, HOMSEQ=TGGTGGTGGTGATGATGTGGTTTGTTGATGGTAGTGTGATGGTCTTGGTGGTGGTGGTGGTGGTGATAGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTGATGCTGGTGATGGTATTGGTGATGGTGTGGTTTGTTGATGGTAGTGTGATGGTCTTCGTGGTGGTGGTGTGGTTTGTCGATGGTAGTGTGGTGGTCTTGGTGCTGGTGGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=430, SVLEN=243, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[131]([VC Unknown @ chr20:61399110-61399431 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=170, CTG_NAMES=asm023293:tig00001, END=61399431, HOMLEN=14, HOMSEQ=AAAACCCACTTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=170, SVLEN=-321, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[132]([VC Unknown @ chr20:61444267 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023295:tig00002, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61444268-61444270, DUP_SEQ_CIGARS=[3M, 3M], END=61444267, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTCCGTGTGTCTTTGTGTGTGTATATGTGTGTTTGTGTATCTGTGTATGAGTCTTTGTGTGTGTTTCTGTGTATCTGTGTGTGTCCATGTCTATGTGTGTCTGTGTGTGTATGTATGTCTGGGTGTATATCTGTGTGTGTGTCTTTGCGTTCACCTGTGTGTGTGTGCATCTGTGTGTACATTTGTGTGTTTCTGCATGTGTGTGTCTGCGTACATCTGTGTCTGTGTGTATATTTGTGTATCCGTATGTATGTGTATCTGTGTGTGTCTTTGTGTACATCCGTGTCTGTGTGTATATTTGTATCTGTGTGTTTCTCTGTGTGCATCTGTGTATATTTGTGAGTTTCTGCATGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTATCTATTTGTATGTATC, INSSEQ_MAP=[589_657_chr20:61444786-61444854_-_588H69M341H_8_2, 651_680_chr20:61444827-61444856_-_650H30M318H_27_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[133]([VC Unknown @ chr20:61620170 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm023302:tig00001, END=61620170, HQ_MAPPINGS=1, INSSEQ=CGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGACGGATGGGTGGGTGGGTGGATGGATGGATGGATGGATGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[134]([VC Unknown @ chr20:61795134 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=422, CTG_NAMES=asm023304:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:61795135-61795137, DUP_SEQ_CIGARS=[3M, 3M], END=61795134, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTGATGGTGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGATGGTGATGGTAGTGATGGTGGTGATGATGGTAATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGATGATGGTAGTAATGATGATGATGGTAGTGATGATGGTGATGGTAGTGATAATGGTGATGATGGTGATGGTGATGATGGTGATGATGATGGTAGTGATAATGGGGATGATGATGGTGATGGTAGTGATGATGGTGATGATGGTAATGGTAGTG, INSSEQ_MAP=[478_554_chr8:141714010-141714086_+_477H77M1237H_42_8, 591_653_chr10:15229580-15229642_-_590H63M1138H_1_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=422, SVLEN=294, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[135]([VC Unknown @ chr20:61893259 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=1008, CTG_NAMES=asm023307:tig00000, END=61893259, HQ_MAPPINGS=1, INSSEQ=GGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGGATAGAGGGATGGTGGGTGGAGGGGTGGGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1008, SVLEN=106, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[136]([VC Unknown @ chr20:61936350 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=442, CTG_NAMES=asm023309:tig00001, END=61936350, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=442, SVLEN=80, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[137]([VC Unknown @ chr20:61951232-61951537 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[83, 86], CTG_NAMES=[asm023311:tig00000, asm027474:tig00000], END=61951537, HOMLEN=14, HOMSEQ=AAAAAACCACTCAC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=86, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[138]([VC Unknown @ chr20:61995568-61995887 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=226, CTG_NAMES=asm023316:tig00002, END=61995887, HOMLEN=14, HOMSEQ=AAAAAAAAATTTGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=226, SVLEN=-319, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[139]([VC Unknown @ chr20:62349692-62349829 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=417, CTG_NAMES=asm023327:tig00000, END=62349829, HQ_MAPPINGS=1, INSSEQ=GGACGGGGGGGGGAGTGGTGGCGGTGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG, INSSEQ_MAP=1124_1183_chr2:32916250-32916309_-_1123H60M451H_28_1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=417, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[13]([VC Unknown @ chr20:6170298-6170630 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=1021, CTG_NAMES=asm022599:tig00000, END=6170630, HOMLEN=14, HOMSEQ=AAGAGTGGACATCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1021, SVLEN=-332, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[140]([VC Unknown @ chr20:62452037 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm023333:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:62452038-62452041, DUP_SEQ_CIGARS=[4M, 4M], END=62452037, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=153, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[141]([VC Unknown @ chr20:62452087-62452235 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=50, CTG_NAMES=asm023333:tig00006, END=62452235, HOMLEN=9, HOMSEQ=GAAGGAGAG, HQ_MAPPINGS=1, INSSEQ_MAP=155_311_chr2:32916377-32916533_-_154H157M231H_2_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=50, SVLEN=-148, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[142]([VC Unknown @ chr20:62510500-62510631 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=181, CTG_NAMES=asm023339:tig00000, END=62510631, HQ_MAPPINGS=1, INSSEQ=CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INSSEQ_MAP=1303_1472_chr2:32916359-32916528_+_1302H170M170H_13_9, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=181, SVLEN=-131, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[143]([VC Unknown @ chr20:62672898-62673787 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=201, CTG_NAMES=asm023346:tig00009, END=62673787, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=201, SVLEN=-889, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[144]([VC Unknown @ chr20:62825064-62825136 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=194, CTG_NAMES=asm023351:tig00002, END=62825136, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=194, SVLEN=-72, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[145]([VC Unknown @ chr20:63092255 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=171, CTG_NAMES=asm023361:tig00002, END=63092255, HQ_MAPPINGS=1, INSSEQ=GCCCAGGTTCCCGGGGCTGCGTGGGAGACACAGAAGTGGGGGCACCTCCGCAGCACCCACATCCTGCCGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=171, SVLEN=71, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[146]([VC Unknown @ chr20:63093346-63094245 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=395, CTG_NAMES=asm023362:tig00000, END=63094245, HQ_MAPPINGS=1, INSSEQ=T, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=395, SVLEN=-899, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[147]([VC Unknown @ chr20:63103397-63103449 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=1062, CTG_NAMES=asm023364:tig00000, END=63103449, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1062, SVLEN=-52, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[148]([VC Unknown @ chr20:63158460 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=80, CTG_NAMES=asm023367:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63158461-63158462, DUP_SEQ_CIGARS=[2M, 2M], END=63158460, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AAATGGTGAATTGGTGGTGGATGGGTGGTGGATGACGGATAGGTGGTGGATGGGTGGGTGGGCGGTAGATTGGAGGATGGATGGTGGTGGGTAGATTGTGGATGGGGATGGATAGTGGATGGATGATGAGTGGGTGGATGAGTAGATGGTGGATGGGGGATGAGTGACTAGATGGTGGATGGATGGTAGGTGGGTTGTGGATAGTGCATGAATGGTAGCTAGATGAGTGGATGGATGGTGGGTGGGCTGTGGATGGGTGGATGGGTGGGGGATGGGTGGATAGATGGTGGATGGTTGGTGGATGGTGGATGGATGGGGGATGGGTTGCAGATAGTGCATGGATGGTATCTAGGTGGGTGGACAGATGGTGGGTGGGCTGTGGATGGTGGATGGTTGGTGG, INSSEQ_MAP=[327_356_chr20:63158566-63158595_+_326H30M224H_31_0, 464_493_chr20:63158573-63158602_+_463H30M87H_58_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=80, SVLEN=402, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[149]([VC Unknown @ chr20:63250559-63250616 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=196, CTG_NAMES=asm023370:tig00000, END=63250616, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=196, SVLEN=-57, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[14]([VC Unknown @ chr20:6665192 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=733, CTG_NAMES=asm022604:tig00000, END=6665192, HQ_MAPPINGS=1, INSSEQ=TTTTTACTTTTTTAATGTGGCTACTAGAAAACTTGAAATTCCGTATGTGGCTTGCATTGCATTTCTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=733, SVLEN=67, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[150]([VC Unknown @ chr20:63352761-63353144 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=96, CTG_NAMES=asm023373:tig00005, END=63353144, HOMLEN=11, HOMSEQ=GCAGGGCCCCC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=96, SVLEN=-383, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[151]([VC Unknown @ chr20:63354205-63354271 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=137, CTG_NAMES=asm023373:tig00001, END=63354271, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=137, SVLEN=-66, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[152]([VC Unknown @ chr20:63445707-63445840 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=200, CONTRACTION=true, CTG_NAMES=asm027479:tig00001, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[2, 1], DUP_REPEAT_UNIT_REF_SPAN=chr20:63445708-63445840, END=63445840, HOMLEN=186, HOMSEQ=CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=200, SVLEN=-133, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[153]([VC Unknown @ chr20:63760709-63761251 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023398:tig00028, END=63761251, HOMLEN=37, HOMSEQ=GCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-542, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[154]([VC Unknown @ chr20:63847239 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm023402:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:63847240-63847311, DUP_SEQ_CIGARS=[72M, 62M26I10M], END=63847239, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=ACTGACACAGAG, INSSEQ_MAP=447_478_chr18:63198933-63198964_+_446H32M210H_1_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=84, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[155]([VC Unknown @ chr20:63847275 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=158, CTG_NAMES=asm023402:tig00001, END=63847275, HQ_MAPPINGS=1, INSSEQ=ACACAGACACACACACTGACACAGAGACACACACAGACACTGACACATACATGCAGAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=158, SVLEN=58, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[156]([VC Unknown @ chr20:64078177 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=146, CTG_NAMES=asm023409:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64078178-64078281, DUP_SEQ_CIGARS=[104M, 104M], END=64078177, EXPANSION=true, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=146, SVLEN=104, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[157]([VC Unknown @ chr20:64097040 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=160, CTG_NAMES=asm023412:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:64097041-64097041, DUP_SEQ_CIGARS=[1M, 1M], END=64097040, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACCGTCCCCATCATCACCATCCTCACCATCACCACCACCACCATCATTACCATCACCATCATCACAGTCATCACCGTCACCATCATCACCATCCTATCACCACCACCACCATCATCACCATCACCATCATCACAATCATCACTGTCACCATCATCACCATCCTCACTATCACCACCACCACCATCATTACCATCACTATCATCACAGTCATCACCGTCACCATCATCACCATCCTCACTATCACCACCACTACCATCATCATCACATTCATCATCACTATTACCATCATCATCACCACCATCACCATCACTATCACCACCATCATTACATTTGTCACCATCACCACCATTATCACCATCACCGCTATCACCACCACCACCGT, INSSEQ_MAP=1347_1488_chr20:64096906-64097041_-_1346H68M6I68M168H_2_18, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=160, SVLEN=452, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[158]([VC Unknown @ chr20:64136447-64136501 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[673, 673], CTG_NAMES=[asm023415:tig00000, asm027485:tig00000], END=64136501, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=673, SVLEN=-54, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[15]([VC Unknown @ chr20:7293689-7294002 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=752, CTG_NAMES=asm022605:tig00000, END=7294002, HOMLEN=14, HOMSEQ=GACAATACATTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=752, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[16]([VC Unknown @ chr20:7435537 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=891, CTG_NAMES=asm022606:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7435538-7435637, DUP_SEQ_CIGARS=[66M3I34M, 100M], END=7435537, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATATATAATATATGTATATATAATATATAATATGTAATATATTATATATAATATATGTATATATAATATAAAATATGTAATATATTATATATAATATAGTATATATAATATGTAATATATTATATATAATATATTATATATAATACGTAATATATTATATATAATATATT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=891, SVLEN=272, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[17]([VC Unknown @ chr20:7719012 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=145, CTG_NAMES=asm022607:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:7719013-7719013, DUP_SEQ_CIGARS=[1M, 1M], END=7719012, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CAGCAATTCAGTTTCATGGGCCTTTTCGTGATTCCTTAAATGTGCCAGGGATGCTTTTGCCCCCTTTATCTTTGTAGCCTTTCTTTCCTCTTCTCGAGATATTCTTCTCCCAAATATCTGTGGAGCTAATTCCCTCGCTTTAATCCAGCTCTGCTTGGGTGTCGCCTCATCAGAAAATCCTTTCTCAACTCCACTATCTAAAAAAGCCCACTCAGACACTTCCTATTCCCTCATGCATCTTTATTTTCTTTAAAGGACATTTTAGCTGACCTATGACATGTCGATTTGTTCATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=145, SVLEN=296, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[18]([VC Unknown @ chr20:11009487 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=150, CTG_NAMES=asm022618:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:11009488-11009493, DUP_SEQ_CIGARS=[6M, 6M], END=11009487, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCACCGAGGTGGTGAATGTCTTGACTGGCTGGATTTTCTGGCTAGATTTCTCCCTTCTCTGTGGATGGTCTCCTGCGCCCATATGCACTTTTGAGTTCCACTCAAGAGCCAGAACTAGTCTTGTTCTTGGGGGTTCAGGACCGTGGAAGAAGTAGTGCTAATGCAACCATATTGCTCATCTCTAGAAAGTGAGCTTCTCTATTGTTTTTGAGACCCAGACTAAATCTTTGTTCCATTTTCCATGGGTTTCTCTCTCAGACCCACTTATACTTGAGTCCTTGCCTTAAAAAATGCTTAGAACCAGTGTTTAGTATGCCTGGCTGCTATTCCAGAGCCACAATCAGGGCCTGATTCTGCACTCTTGGGCTTCACAATTGCCCGAGAGTGCAGCTATTATTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=150, SVLEN=406, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[19]([VC Unknown @ chr20:11536617-11536940 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=843, CTG_NAMES=asm022623:tig00000, END=11536940, HOMLEN=13, HOMSEQ=CAAATTCTGTCTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=843, SVLEN=-323, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[1]([VC Unknown @ chr20:1408499-1410170 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[145, 145], CTG_NAMES=[asm022547:tig00013, asm022548:tig00002], END=1410170, HOMLEN=3, HOMSEQ=ACA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=145, SVLEN=-1671, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[20]([VC Unknown @ chr20:12473053 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022629:tig00006, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:12473054-12473133, END=12473053, EXPANSION=true, HOMLEN=2, HOMSEQ=TA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=80, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[21]([VC Unknown @ chr20:12558793-12558809 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=140, CTG_NAMES=asm022630:tig00002, END=12558809, HQ_MAPPINGS=1, INSSEQ=GACAAAGAAACAAACAAACAAAACAAAACTATATATATATATATATACACACACACACACACACACACATTATTAAAATTCAGATTTAAATAAACTGACTATAAAAAAGTACTTTTGAAACAAAAACTTTAATCATGATTATATATATT, INSSEQ_MAP=[368_458_chrX:99014092-99014173_-_367H44M9I38M242H_22_12, 441_484_chr8:14015239-14015282_+_440H44M216H_0_0], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=140, SVLEN=-16, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[22]([VC Unknown @ chr20:12983139 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=124, CTG_NAMES=asm022631:tig00004, END=12983139, HQ_MAPPINGS=1, INSSEQ=CCATTAAGTAGGCTATACATTTTGGTAGAGACCCTTTATCAGGTTAAGAAGGTTCCCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=124, SVLEN=59, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[23]([VC Unknown @ chr20:14548422-14548735 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=123, CTG_NAMES=asm022640:tig00001, END=14548735, HOMLEN=14, HOMSEQ=AAAATACATTATCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=123, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[24]([VC Unknown @ chr20:14619452 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=1100, CTG_NAMES=asm022641:tig00000, END=14619452, HQ_MAPPINGS=1, INSSEQ=AGGGAAAGGAGGGGAGGGGAAGGGAGGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGAATGGGAGGGGAGGGGAGGGTGGAAGGAAGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1100, SVLEN=98, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[25]([VC Unknown @ chr20:14861982 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=248, CTG_NAMES=asm022642:tig00000, DUP_ANNOTATIONS_IMPRECISE=true, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:14861983-14862142, END=14861982, EXPANSION=true, HOMLEN=79, HOMSEQ=ATATATATAAATATATATAAATATATAAATATATATAAATATATATTTATACATAAATATATAAATATATATAAATATA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=248, SVLEN=160, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[26]([VC Unknown @ chr20:14955029 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=205, CTG_NAMES=asm022643:tig00000, END=14955029, HQ_MAPPINGS=1, INSSEQ=TATATTATATATAATTTATATAATATAATTTATAATGTTTATTATATAAAATTTATTTATATATAATAAATATATTATATACAATTTATATTTTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=205, SVLEN=95, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[27]([VC Unknown @ chr20:15321085-15323122 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[138, 138], CTG_NAMES=[asm022646:tig00002, asm022647:tig00003], END=15323122, HOMLEN=3, HOMSEQ=TTT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=138, SVLEN=-2037, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[28]([VC Unknown @ chr20:15454656-15454831 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=231, CTG_NAMES=asm022648:tig00011, END=15454831, HQ_MAPPINGS=1, INSSEQ=CTGCAAAAGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=231, SVLEN=-175, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[29]([VC Unknown @ chr20:15578584 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=379, CTG_NAMES=asm022649:tig00001, END=15578584, HQ_MAPPINGS=1, INSSEQ=TACAGTATAACAACAAGAAAATGAATCTAAGCCATGAGAAGTCACAATGGAAGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=379, SVLEN=54, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[2]([VC Unknown @ chr20:1798038 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=963, CTG_NAMES=asm022550:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:1798039-1798041, DUP_SEQ_CIGARS=[3M, 3M], END=1798038, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTAGGTGACAGAGTGAGGCTCCATCTTAAGAAAAAAAAAAGCCTGTTAAGAGGATGAAAAGAGCAGCCAGGCATTGACTGTGGTGCCTCACGCCTATAATCCCAGTGCTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=963, SVLEN=114, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[30]([VC Unknown @ chr20:16059656-16059750 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022653:tig00002, END=16059750, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=-94, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[31]([VC Unknown @ chr20:17032455 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm022659:tig00000, END=17032455, HQ_MAPPINGS=1, INSSEQ=ATGTACATGTATATATACACATATATACATGTACATGTATACGTACGTATGTATACATGTACATGTATACGTACGTATGTATACATGT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[32]([VC Unknown @ chr20:17122806-17123153 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=127, CTG_NAMES=asm022660:tig00000, END=17123153, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=127, SVLEN=-347, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[33]([VC Unknown @ chr20:17197186 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=296, CTG_NAMES=asm022661:tig00001, END=17197186, HQ_MAPPINGS=1, INSSEQ=GGGCAGGAGGGAGGAGGGAGGGCAGGGGGAGGGAGGGTGGGAAGGAAAGAAGGAAAGAAGGGAGGGAGGTGGGGAGTAGGGGAGGAGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=296, SVLEN=89, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[34]([VC Unknown @ chr20:18689892 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm022667:tig00008, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18689893-18689923, DUP_SEQ_CIGARS=[31M, 31M], END=18689892, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCTGGGAGTTCAAGGCTACAGTGAGCTCAGATTGTGCCACTGTACTCCAACCTGGCTGACGGAGCAAGACATTGTCACTCAAAAAATAAAAAATAAAAAAAATAGTGGCTGGGTATGGCGGCTCATGCCTTAATCCCAGCACACT, INSSEQ_MAP=217_305_chr1:205696799-205696887_+_216H89M113H_0_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=176, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[35]([VC Unknown @ chr20:18695427 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=144, CTG_NAMES=asm022668:tig00006, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:18695428-18695432, DUP_SEQ_CIGARS=[5M, 5M], END=18695427, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CCCCTCCCCTCCCTGTCCCTTCCTCCCTCCCGCCCTCCCTTCCTTCCTCCCTTCCGTCCTTCCTTCCTTCCTTTTCTTTCCCTCCCTCCTTCCTTTACTTCTTCCCTTCCCTTGCTTTCCTTCCCCTTCCCTTTCCTTCCCTTTCCCTTCCCCTTCTTCCCCTTCCCCTTCTTCCCCTTCCTGTTCCTCTTCTT, INSSEQ_MAP=[396_432_chr20:18695429-18695465_-_395H37M288H_60_1, 421_453_chr12:119850460-119850492_+_420H33M267H_0_0, 503_559_chr6:146837819-146837875_+_502H57M161H_0_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=144, SVLEN=199, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[36]([VC Unknown @ chr20:19080772-19081085 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=136, CTG_NAMES=asm022669:tig00006, END=19081085, HOMLEN=14, HOMSEQ=CCAGGGCCTCTTTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=136, SVLEN=-313, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[37]([VC Unknown @ chr20:21046050 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=109, CTG_NAMES=asm022681:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:21046051-21046053, DUP_SEQ_CIGARS=[3M, 3M], END=21046050, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGCTTTTGTGCTGATCCACGTTCATTTGCTACTCTGTGGATGTTATTTATTTCATAGGTATTGAAAGATGGCAGCATTTACTAACACACACACATGCACAAGTGTACACACACATAGCCGATTGTATTTTCCAAAGGTGACTTCACTAGTATCTTCTAGAACTTCCCTGTCAACAAGTGGAGTCTAATTCCCTTGCCCTTGAATCTGGACTGTCTTGTGAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=109, SVLEN=225, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[38]([VC Unknown @ chr20:21177057-21178512 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[135, 135], CTG_NAMES=[asm022684:tig00004, asm022685:tig00001], END=21178512, HQ_MAPPINGS=2, INSSEQ=TGACTTTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=135, SVLEN=-1455, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[39]([VC Unknown @ chr20:21305429-21308111 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[637, 717], CTG_NAMES=[asm022687:tig00000, asm022688:tig00000], END=21308111, HOMLEN=60, HOMSEQ=TTTTTAGTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=717, SVLEN=-2682, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[3]([VC Unknown @ chr20:2379257-2379962 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=198, CTG_NAMES=asm022554:tig00001, END=2379962, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=198, SVLEN=-705, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[40]([VC Unknown @ chr20:21869264-21869551 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=149, CTG_NAMES=asm022693:tig00002, END=21869551, HOMLEN=1, HOMSEQ=T, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=149, SVLEN=-287, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[41]([VC Unknown @ chr20:23122666-23122995 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=232, CTG_NAMES=asm022700:tig00001, END=23122995, HQ_MAPPINGS=1, INSSEQ=TTCACCTGCAAGCCCTCCCACACGGTGACATGACAG, INSSEQ_MAP=848_889_chr20:23122559-23122600_-_847H42M230H_60_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=232, SVLEN=-329, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[42]([VC Unknown @ chr20:23268038 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm022703:tig00000, END=23268038, HQ_MAPPINGS=1, INSSEQ=TGGGATGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGGGGGGTGGGAGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=85, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[43]([VC Unknown @ chr20:23765578 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=642, CTG_NAMES=asm022708:tig00002, END=23765578, HQ_MAPPINGS=1, INSSEQ=CTTGTAAAGCAACTATGCAATAGAAACTACAAAGCAACCAGTTAATAACTTCATGAGAGGATCAAAATTTCACTTATTT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=642, SVLEN=79, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[44]([VC Unknown @ chr20:23774621-23774686 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=776, CTG_NAMES=asm022709:tig00000, END=23774686, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=776, SVLEN=-65, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[45]([VC Unknown @ chr20:23942645 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=849, CTG_NAMES=asm022713:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:23942646-23942647, DUP_SEQ_CIGARS=[2M, 2M], END=23942645, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TTATAACCATAACTGTCACCATTATCATAATCATCATCACCACCATCACTACAACAATCACCATTATCATCACCACCATCTTCACCACCATCACTACCAATACCACCATCATCACCACCATCACAATCATTATCCTTATCAACATCACCATTATCAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=849, SVLEN=159, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[46]([VC Unknown @ chr20:24957071-24957078 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=65, CTG_NAMES=asm022725:tig00003, END=24957078, HQ_MAPPINGS=1, INSSEQ=GCAGGTGAGGGGGCAGGTGAGGAGGGGGCAGGTGAGGGAGAACAGGTGGGGGGCAGGTGAGGGGGCAGGTAAGAGAGAACATGTTAGGGAGTACAGGTGGGTGGACAGGCGAGGGGGGCAGGTGAGGAGGGACAGGTGAAGGGGGGAAGGTGACAGGGGGCAGGTG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=65, SVLEN=-7, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[47]([VC Unknown @ chr20:25248020 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=118, CTG_NAMES=asm022727:tig00004, END=25248020, HQ_MAPPINGS=1, INSSEQ=CCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGCCCCGCCCCGCCCCCCGAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=118, SVLEN=81, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[48]([VC Unknown @ chr20:28561412 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=[185, 185], CTG_NAMES=[asm022813:tig00050, asm025575:tig00034], END=28561412, HQ_MAPPINGS=2, INSSEQ=ACATCATATGTGACAGGCTCTCATAGTCACCATCATCACAGAAATCTCGCGCATGTTACAGAGAAGCACTGTCCT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=185, SVLEN=75, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[49]([VC Unknown @ chr20:28750004-29239784 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=94, CTG_NAMES=asm019481:tig00054, END=29239784, HOMLEN=85, HOMSEQ=AAAGGTTCAACTCTGTGAGATGAATGCACACATCACAAGGAAGTTTCTCAGAAAGCTTCTGTTTAGTTTTTATGTGAAGATATTT, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=94, SVLEN=489780, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[4]([VC Unknown @ chr20:2842812 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=915, CTG_NAMES=asm022557:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:2842813-2842903, DUP_SEQ_CIGARS=[91M, 91M], END=2842812, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATGTATCTATCGATAGATAGATG, INSSEQ_MAP=950_1019_chr20:2842830-2842903_+_949H35M4D35M915H_60_4, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=915, SVLEN=172, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[50]([VC Unknown @ chr20:28809710-28821005 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=102, CTG_NAMES=asm023541:tig00082, END=28821005, HOMLEN=40, HOMSEQ=CTGTGAGATGAATGCACACATCACAAAGAAGTTTATCAGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=102, SVLEN=-11295, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[51]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[177, 237, 177], CTG_NAMES=[asm023555:tig00001, asm024904:tig00018, asm025853:tig00028], END=28830987, HQ_MAPPINGS=3, INSSEQ=CAGAATCTACAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=237, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[52]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[183, 183], CTG_NAMES=[asm025853:tig00020, asm029005:tig00175], END=28830987, HQ_MAPPINGS=2, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAACGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=183, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[53]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=298, CTG_NAMES=asm030394:tig00010, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAAGTGGATATTGGGAGCGCATTGAGGCTTATGGTGGAAAAGGAACTATCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=298, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[54]([VC Unknown @ chr20:28830987 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=220, CTG_NAMES=asm014934:tig00016, END=28830987, HQ_MAPPINGS=1, INSSEQ=CAGAATCTGCAGGTGGATATTGGGAGCGCATTGAGGCCTATGGTGGAAAAGGAACTACCTTCACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=220, SVLEN=65, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[55]([VC Unknown @ chr20:28841887-28896363 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=81, CTG_NAMES=asm022815:tig00006, END=28896363, HOMLEN=16, HOMSEQ=AGTGGATATTTGGAGC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=81, SVLEN=-54476, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[56]([VC Unknown @ chr20:29258220-29888653 Q. of type=SYMBOLIC alleles=[G*, <INV>] attr={ALIGN_LENGTHS=219, CTG_NAMES=asm019484:tig00062, END=29888653, HOMLEN=21, HOMSEQ=TGGAAAAGGAAATATCTTCAC, HQ_MAPPINGS=1, INV55=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=219, SVLEN=630433, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[57]([VC Unknown @ chr20:29280195-30461908 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=350, CTG_NAMES=asm022836:tig00002, END=30461908, HQ_MAPPINGS=1, INSSEQ=ATTTCACCAAAGTTCTCAAAGGGCTCAAAACTATCCCTTTGCACATTCCACAAAAAGACCATTTCCAAACTACTCTATGAATAGTAAGGTTCAATTCTATCCGATGAATGAAA, INSSEQ_MAP=1021_1340_chr14:16069506-16069825_-_1020H320M220H_0_47, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=350, SVLEN=-1181713, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[58]([VC Unknown @ chr20:29402094-29402156 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=155, CTG_NAMES=asm022863:tig00023, END=29402156, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=155, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[59]([VC Unknown @ chr20:29447838-29447883 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=59, CTG_NAMES=asm029284:tig00030, END=29447883, HQ_MAPPINGS=1, INSSEQ=CCCTCTTTCCCTCCGTCCCTCCCTCAGTTCC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=59, SVLEN=-45, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[5]([VC Unknown @ chr20:2948698-2953765 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[131, 131], CTG_NAMES=[asm022558:tig00013, asm022559:tig00020], END=2953765, HOMLEN=6, HOMSEQ=CCCAGC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=131, SVLEN=-5067, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[60]([VC Unknown @ chr20:29697363-29697632 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[62, 220], CTG_NAMES=[asm001467:tig00000, asm022884:tig00040], END=29697632, HQ_MAPPINGS=2, INSSEQ=TTCAACTCTGTGAGTTGAATGCAGACGTCAAAAAGAAGTTCCTGAGAATACTTCTATCTAGCTTTTATGTGAAGGTATTCCCATTTCCAACGAACGCCTCAAGACAGTCCAAATATCCACCTGCAGATTCTACGAAAAGAGTGTTTCAAAACTACCCTATGAAAAGGTA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=220, SVLEN=-269, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[61]([VC Unknown @ chr20:29873767-29873838 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[129, 129], CTG_NAMES=[asm022917:tig00032, asm025822:tig00004], END=29873838, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=129, SVLEN=-71, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[62]([VC Unknown @ chr20:30159545-30159798 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=142, CTG_NAMES=asm001467:tig00029, END=30159798, HOMLEN=48, HOMSEQ=CCACTTGCAGATTCTACGAAAAGAGTGTTTCAAAACTGCTCTATGAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=142, SVLEN=-253, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[63]([VC Unknown @ chr20:30503689 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=186, CTG_NAMES=asm022946:tig00009, END=30503689, HQ_MAPPINGS=1, INSSEQ=ACAGAGAGAGAGACAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=186, SVLEN=51, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[64]([VC Unknown @ chr20:30813484-30813569 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm004447:tig00008, END=30813569, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-85, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[65]([VC Unknown @ chr20:31663045 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=101, CTG_NAMES=asm023005:tig00007, END=31663045, HQ_MAPPINGS=1, INSSEQ=ATATATATATATACACACACATATATATACATATATACATATATATACACACACATATACACACACACACACACAC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=101, SVLEN=76, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[66]([VC Unknown @ chr20:32311424-32311729 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=85, CTG_NAMES=asm023014:tig00000, END=32311729, HOMLEN=12, HOMSEQ=AAAGAACAGCAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=85, SVLEN=-305, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[67]([VC Unknown @ chr20:32723050-32724971 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[122, 122], CTG_NAMES=[asm023020:tig00017, asm023021:tig00009], END=32724971, HQ_MAPPINGS=2, INSSEQ=ATAATAATAATAATAATAATAAT, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=122, SVLEN=-1921, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[68]([VC Unknown @ chr20:32723063-32724971 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=[118, 118], CTG_NAMES=[asm023020:tig00018, asm023021:tig00010], END=32724971, HOMLEN=11, HOMSEQ=AAAGACTTGTG, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=118, SVLEN=-1908, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[69]([VC Unknown @ chr20:32937680-32941583 Q. of type=SYMBOLIC alleles=[G*, <DEL>] attr={ALIGN_LENGTHS=[149, 149], CTG_NAMES=[asm023023:tig00017, asm023024:tig00005], END=32941583, HQ_MAPPINGS=2, INSSEQ=GTGGAGTAC, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=149, SVLEN=-3903, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[6]([VC Unknown @ chr20:3814381-3814806 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=278, CTG_NAMES=asm022566:tig00011, END=3814806, HQ_MAPPINGS=1, INSSEQ=CACA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=278, SVLEN=-425, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[70]([VC Unknown @ chr20:33277020-33277348 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=878, CTG_NAMES=asm023029:tig00000, END=33277348, HOMLEN=74, HOMSEQ=CCTTCCCTGCCACCCGCCCCACTCCCTTCCCCTCCAGCCCACCTTCCCTGCCACCCGCCCCACTCCCTTCCCCT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=878, SVLEN=-328, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[71]([VC Unknown @ chr20:34228122-34231419 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[910, 786], CTG_NAMES=[asm023038:tig00000, asm023039:tig00000], END=34231419, HOMLEN=10, HOMSEQ=TAGAACTTTC, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=910, SVLEN=-3297, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[72]([VC Unknown @ chr20:34528006-34528339 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=110, CTG_NAMES=asm023040:tig00005, END=34528339, HOMLEN=20, HOMSEQ=AAAAACTACCCTACTGGAGT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=110, SVLEN=-333, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[73]([VC Unknown @ chr20:35033845-35034167 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=243, CTG_NAMES=asm023047:tig00001, END=35034167, HOMLEN=18, HOMSEQ=AAAAAATAAAAGAGTAAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=243, SVLEN=-322, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[74]([VC Unknown @ chr20:35226721 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=68, CTG_NAMES=asm023053:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:35226722-35226723, DUP_SEQ_CIGARS=[2M, 2M], END=35226721, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGTCCGCGGCGCCGTGACTCGGCGGCTCCGCAGCGGCTGCAGCGGGAGGACCCGGCCGGAGCCGCCGCCGCCGCCGCCATCGCAGCCGGGCGGC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=68, SVLEN=96, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[75]([VC Unknown @ chr20:36392491-36392586 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=237, CTG_NAMES=asm023060:tig00009, END=36392586, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=237, SVLEN=-95, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[76]([VC Unknown @ chr20:37187206-37187518 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=132, CTG_NAMES=asm023067:tig00002, END=37187518, HOMLEN=14, HOMSEQ=AAGATCAATCATTT, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=132, SVLEN=-312, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[77]([VC Unknown @ chr20:37914404 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1138, CTG_NAMES=asm023073:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:37914405-37914410, DUP_SEQ_CIGARS=[6M, 6M], END=37914404, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GGGAGTGTGTGTATATATATATGTGTGTGTATGTAAGTATATGTGTATGTGTGTTTATGTGTATGTGGGTGTATCTGTGTATGTGTGTATATATGTGTGTAGGGGTGTAGGTGTGTGTACGTGTGTGGGGGGAGTATTTGGGTGTGTATGTGTGTGTATGTGGTGTGTATATGTGGGGGGAGTGGGTGTGTGTGCGTATGTGTGCGTATGTGTATGTACGTGTGTGCATGTC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1138, SVLEN=238, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[78]([VC Unknown @ chr20:38122404-38122466 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=120, CTG_NAMES=asm023075:tig00006, END=38122466, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=120, SVLEN=-62, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[79]([VC Unknown @ chr20:38124003 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=362, CTG_NAMES=asm023076:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38124004-38124014, DUP_SEQ_CIGARS=[11M, 11M], END=38124003, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TAATATACCTATTATATATAATATACCTATTATATATAAAATATACCTATTATATATAATATACCTATTATATACATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATATAATATACCTATTATATGCATTATATAATATATTATATATAATATGCATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATTATATATATAATATACATATTATATGTATTATATATTATATATAATATACATATTATATATTATATATTATATACATATTATATATTATATATTATATACATATTATATATTATATACATATTATATATTATATATTATATACATATTATACATTATATATATCTAAAATATATAATACACATTATATATTATATAATACACATTATATATAATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATATAATACACATTATATATTATATAATACACATTATATATTATATATAATACACATTATATATATAATACACATTATATATTATATATAATACATAATACACATTATA, INSSEQ_MAP=[1153_1377_chr20:38124008-38124230_-_1152H75M3I42M1I82M2D22M800H_29_11, 1392_1605_chr2:162936695-162936899_-_1391H171M9I34M572H_0_31, 1780_1847_chr20:38123803-38123868_-_1779H35M2I31M330H_21_3], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=362, SVLEN=801, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[7]([VC Unknown @ chr20:4798670 Q. of type=SYMBOLIC alleles=[C*, <DUP>] attr={ALIGN_LENGTHS=169, CTG_NAMES=asm022579:tig00003, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:4798671-4798803, DUP_SEQ_CIGARS=[133M, 133M], END=4798670, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=TGACAGAGTGAAACTCTGTCTCAGAAAAAAAATAAAAGACTCGAAGCTTCCAGGCTGTTCAGAAGTGAAATGAGACAGGTTTGAGCCACACTAACTTATGCTTCATAGACATGACCTTATCATGTGTTTAAAAACTTGTGGCTGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATTGCCTGAAGTTAGGAATTTGAGACCAGTCTGACCAACATGGTGAAACCCATCTCTACTAAAAATACAAAAA, INSSEQ_MAP=[150_199_chr1:17661096-17661145_-_149H50M1443H_4_0, 320_543_chr2:233327613-233327838_-_319H127M2D97M1099H_0_30], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=169, SVLEN=404, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[80]([VC Unknown @ chr20:38653112 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=224, CTG_NAMES=asm023082:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:38653113-38653268, DUP_SEQ_CIGARS=[57M21I99M, 67M44I89M], END=38653112, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=CTGGTGATGATAATGGTGGTGGTGGTGGTGATGGTGATGATGATTATGATGGTGGTGGTGGTGGTGGTGGTGCTGGTGATAGTGGTGGTGGTGGTGCTGGTGATGATAATGGTGGTGGTGGTGATGATGGTGATG, INSSEQ_MAP=1297_1622_chr20:38653054-38653385_-_1296H128M15D64M6I105M3I20M1298H_59_53, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=224, SVLEN=291, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[81]([VC Unknown @ chr20:39587059 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=754, CTG_NAMES=asm023090:tig00000, END=39587059, HQ_MAPPINGS=1, INSSEQ=TGTATATATATGTATATATATATATACATATATATGTGTATATATGTGTGTA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=754, SVLEN=52, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[82]([VC Unknown @ chr20:39708990-39709127 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=92, CTG_NAMES=asm023092:tig00008, END=39709127, HOMLEN=15, HOMSEQ=AAAAATATGACTCGA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=92, SVLEN=-137, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[83]([VC Unknown @ chr20:42213265 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=[148, 148], CTG_NAMES=[asm023097:tig00002, asm023098:tig00003], END=42213265, HQ_MAPPINGS=2, INSSEQ=TTTCACATCATTAAAAGTTGTAGAATCTTGGATTCTCTGGCTGGAAAGGCCCTCCCA, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=148, SVLEN=57, SVTYPE=INS, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[84]([VC Unknown @ chr20:42958331 Q. of type=SYMBOLIC alleles=[G*, <DUP>] attr={ALIGN_LENGTHS=1050, CTG_NAMES=asm023102:tig00000, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:42958332-42958333, DUP_SEQ_CIGARS=[2M, 2M], END=42958331, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=AGGGAGGAGAGAGAGGAGAGGGAAGGGTGGGGAAGGGAAGAAGGGAGGAAGGGAGGACGGGAGGGCAAAGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAGGAGGGGAGGGGAAGGGAAGGGAGGGGAAGGGAAGGGAGGGGAAGGGAACGGACTGGA, INSSEQ_MAP=1159_1223_chr10:115004472-115004536_-_1158H65M1228H_12_3, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1050, SVLEN=168, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[85]([VC Unknown @ chr20:43395954-43397152 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=[237, 237], CTG_NAMES=[asm023109:tig00000, asm023110:tig00002], END=43397152, HOMLEN=18, HOMSEQ=TGGTAAAACCCCATTTCT, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=237, SVLEN=-1198, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0.001s |
passed |
| testType[86]([VC Unknown @ chr20:44047485-44047884 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={ALIGN_LENGTHS=526, CTG_NAMES=asm023115:tig00000, END=44047884, HOMLEN=3, HOMSEQ=TAA, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=526, SVLEN=-399, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[87]([VC Unknown @ chr20:45906708-45907144 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=1047, CTG_NAMES=asm023133:tig00000, END=45907144, HOMLEN=125, HOMSEQ=GGTGAAACCCCGTCTCTACTAAAACACAAAAAACTAGTTGGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCGAGATGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGATTGCAG, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1047, SVLEN=-436, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[88]([VC Unknown @ chr20:47156115-47156165 Q. of type=SYMBOLIC alleles=[C*, <DEL>] attr={ALIGN_LENGTHS=[505, 810], CTG_NAMES=[asm005638:tig00000, asm023138:tig00001], END=47156165, HQ_MAPPINGS=2, MAPPING_QUALITIES=[60, 60], MAX_ALIGN_LENGTH=810, SVLEN=-50, SVTYPE=DEL, TOTAL_MAPPINGS=2} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[89]([VC Unknown @ chr20:47225596 Q. of type=SYMBOLIC alleles=[A*, <DUP>] attr={ALIGN_LENGTHS=1223, CTG_NAMES=asm023140:tig00001, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:47225597-47225598, DUP_SEQ_CIGARS=[2M, 2M], END=47225596, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GAGGGGAATGAAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAAGGGAGGGGAGGAGGGAAAGGGAGGGCAGGGGGGAGGGGAGGGGAGG, INSSEQ_MAP=1350_1494_chrX:36434192-36434336_+_1349H145M1266H_19_8, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=1223, SVLEN=146, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[8]([VC Unknown @ chr20:4811224 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=188, CTG_NAMES=asm022580:tig00007, END=4811224, HQ_MAPPINGS=1, INSSEQ=CCTGTAGTCTTAGCTACTCAGGAGGTGCACCCCTGTAGTCTTAGCTACTCAGGAGGTGCACC, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=188, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[90]([VC Unknown @ chr20:47894741-48503172 Q. of type=SYMBOLIC alleles=[C*, <INV>] attr={ALIGN_LENGTHS=88, CTG_NAMES=asm023152:tig00018, END=48503172, HOMLEN=72, HOMSEQ=TGACCCTCGAACTATAACAACAATGCTCCTGCCTCAGTCTGCAGCTCCACTACCCTGAAACTCGAACAAGAC, HQ_MAPPINGS=1, INV33=true, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=88, SVLEN=608431, SVTYPE=INV, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[91]([VC Unknown @ chr20:48010935 Q. of type=SYMBOLIC alleles=[C*, <INS>] attr={ALIGN_LENGTHS=437, CTG_NAMES=asm023146:tig00000, END=48010935, HQ_MAPPINGS=1, INSSEQ=ATCACCATCATCACAACCACCATCGTCAATATCACCATCACTTTCATAATCACCACCACCACAACCACCATCAATATCACCATCACCTTAATCATCACCACAACCACCATCAAT, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=437, SVLEN=114, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[92]([VC Unknown @ chr20:49325647 Q. of type=SYMBOLIC alleles=[G*, <INS>] attr={ALIGN_LENGTHS=745, CTG_NAMES=asm023159:tig00000, END=49325647, HQ_MAPPINGS=1, INSSEQ=ATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACAGGGTTATTAGATGGATGTTGTGAGA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=745, SVLEN=82, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[93]([VC Unknown @ chr20:49590968 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=152, CTG_NAMES=asm023162:tig00000, END=49590968, HQ_MAPPINGS=1, INSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=152, SVLEN=62, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[94]([VC Unknown @ chr20:50011732 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=221, CTG_NAMES=asm023166:tig00006, END=50011732, HQ_MAPPINGS=1, INSSEQ=GGAAGGGAGTGGGGGAGGGGAGGGTGAGGGGAGGGGAAAGGGGAGGGAAGGAGAGAGAGGAGGGGAGGGGAGAGGGGAGGGGAGGGAAGGGAAGGGAAGG, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=221, SVLEN=100, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[95]([VC Unknown @ chr20:50094219 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=147, CTG_NAMES=asm023168:tig00020, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50094220-50094297, DUP_SEQ_CIGARS=[78M, 37M1D40M], END=50094219, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GCATTATATAATATATAATGCATTATATTATAATGCATTATATAATATATAATGCATTATATAATATATA, INSSEQ_MAP=332_394_chr20:50094235-50094297_+_331H63M125H_23_0, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=147, SVLEN=148, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[96]([VC Unknown @ chr20:50258483 Q. of type=SYMBOLIC alleles=[T*, <DUP>] attr={ALIGN_LENGTHS=90, CTG_NAMES=asm012064:tig00007, DUP_NUM=[1, 2], DUP_REPEAT_UNIT_REF_SPAN=chr20:50258484-50258503, DUP_SEQ_CIGARS=[20M, 20M], END=50258483, EXPANSION=true, HQ_MAPPINGS=1, INSSEQ=GTCTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTGTCTGTGTCTGTGTGTGAGTCTGTGTGTGTGTGTCTCTCTGCGTCTGTGTCTGTGTGTGTCTGTGTGTGTGTACGTGTGTGTCTGTGTGTGTCTGTGTGTGTGCGTGTGTCTGTGTGTGTGC, INSSEQ_MAP=[486_605_chrUn_JTFH01000044v1_decoy:3396-3515_-_485H120M194H_7_13, 509_561_chr21:17082939-17082991_+_508H53M238H_60_2, 540_602_chr12:15254681-15254743_-_539H63M197H_0_3, 614_732_chr22:27221196-27221314_+_613H119M67H_0_11], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=90, SVLEN=204, SVTYPE=DUP, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[97]([VC Unknown @ chr20:50666190 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=[161, 130, 365], CTG_NAMES=[asm003374:tig00022, asm023177:tig00006, asm028570:tig00001], END=50666190, HQ_MAPPINGS=3, INSSEQ=TTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC, MAPPING_QUALITIES=[60, 60, 60], MAX_ALIGN_LENGTH=365, SVLEN=88, SVTYPE=INS, TOTAL_MAPPINGS=3} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[98]([VC Unknown @ chr20:51740560 Q. of type=SYMBOLIC alleles=[A*, <INS>] attr={ALIGN_LENGTHS=111, CTG_NAMES=asm023191:tig00000, END=51740560, HQ_MAPPINGS=1, INSSEQ=ATTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTAACCAACATGAGGAAACCCCGTCTCTACTAAAAATACAAAATTAGATGGGCGTGGTGGCGCATGCCTGTAATTCAAACTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGACAGAGGTTGTGGTAAGCCAAGATCATGCCATTGTACTCCAGCATGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACCCTGGAGACTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGATTGCAGTGAGCCAAGATTACGCCACTGCACTCCAGCCTGGGCACCAAGAGCAAAACCCTGTCTCAAAAAAATTAACAAATAAAAAGATTTCTGTCTGCCACACGGCTGGTCCATGTGTAAAGACACATTCCTGTTGGTTTTATGTGTCTTGAATTCTAATGGG, INSSEQ_MAP=[204_249_chr3:53301282-53301327_+_203H46M1425H_0_1, 233_375_chr7:44779821-44779963_-_232H143M1299H_0_10, 361_635_chr14:82163062-82163336_-_360H275M1039H_5_25, 507_793_chr16:14646203-14646487_+_506H148M2I137M881H_9_42], MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=111, SVLEN=549, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[99]([VC Unknown @ chr20:51741034 Q. of type=SYMBOLIC alleles=[T*, <INS>] attr={ALIGN_LENGTHS=108, CTG_NAMES=asm023191:tig00001, END=51741034, HQ_MAPPINGS=1, INSSEQ=TTAATTAATTAAAAATAAATTTTAATTAATTAATTAAAAATAAATTTTAA, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=108, SVLEN=50, SVTYPE=INS, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |
| testType[9]([VC Unknown @ chr20:5553899-5554275 Q. of type=SYMBOLIC alleles=[A*, <DEL>] attr={ALIGN_LENGTHS=113, CTG_NAMES=asm022589:tig00002, END=5554275, HOMLEN=2, HOMSEQ=GC, HQ_MAPPINGS=1, MAPPING_QUALITIES=60, MAX_ALIGN_LENGTH=113, SVLEN=-376, SVTYPE=DEL, TOTAL_MAPPINGS=1} GT=[] filters=, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@279b5232) |
0s |
passed |