Class org.broadinstitute.hellbender.tools.spark.transforms.markduplicates.MarkDuplicatesSparkUnitTest
Tests
Test |
Duration |
Result |
markDupesTest[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.unmarkedDups.noDups.bam, 20, 0) |
2.967s |
passed |
markDupesTest[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.unmarkedDups.bam, 90, 6) |
0.619s |
passed |
markDupesTest[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.markedDups.bam, 90, 6) |
0.508s |
passed |
Standard error
21:25:38.229 WARN SparkContextFactory - Environment variables HELLBENDER_TEST_PROJECT and HELLBENDER_JSON_SERVICE_ACCOUNT_KEY must be set or the GCS hadoop connector will not be configured properly
21:25:38.666 WARN NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable