Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest
Tests
| Test |
Duration |
Result |
| compareOldWithReblocked |
0.001s |
passed |
| testAllHetsForLargeCohorts |
0.748s |
passed |
| testEmptyIfNoGenotypes |
0.001s |
passed |
| testInbreedingCoeffForMultiallelicVC |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_AS |
0.004s |
passed |
| testInbreedingCoeffForMultiallelicVC_refAltFlip |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_usingFounders |
0s |
passed |
| testInbreedingCoeffForMultiallelicVC_usingPedigreeFile |
0.001s |
passed |
| testLabels |
0s |
passed |
| testLabels_AS |
0s |
passed |
| testLargeCohorts |
1.084s |
passed |
| testRoundingIsntAppliedToEachGenotype |
0s |
passed |
| testSingletonVsCommonAllele |
0.005s |
passed |
| testSingletonVsCommonAllele_refAltFlip |
0.005s |
passed |
| testTinyCohorts_AS |
0s |
passed |
Standard error
21:26:03.472 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
21:26:03.472 DEBUG GenomeLocParser - 1 (16000 bp)
21:26:03.472 DEBUG GenomeLocParser - 2 (16000 bp)
21:26:03.472 DEBUG GenomeLocParser - 3 (16000 bp)
21:26:03.472 DEBUG GenomeLocParser - 4 (16000 bp)
21:26:04.222 WARN InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
21:26:04.229 INFO PedReader - Phenotype is other? false
21:26:05.182 DEBUG ExecutorMetricsPoller - removing (45, 0) from stageTCMP
21:26:05.182 DEBUG ExecutorMetricsPoller - removing (46, 0) from stageTCMP