Class org.broadinstitute.hellbender.tools.walkers.annotator.QualByDepthUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > QualByDepthUnitTest
18

tests
0

failures
0

ignored
0.236s

duration
100%

successful

Tests

Test Duration Result
testAnnotate_AS 0.001s passed
testDescriptions_AS 0s passed
testEmpty[0]([VC test @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 5,5]] filters=) 0s passed
testEmpty[1]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[] filters=) 0s passed
testEmpty[2]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[2 A*/A* DP 10 AD 10,0]] filters=) 0s passed
testUsingAD[0]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 5,5]] filters=, 5.0) 0s passed
testUsingAD[1]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C AD 0,0]] filters=, 0.0) 0s passed
testUsingAD[2]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 0,0]] filters=, 5.0) 0.001s passed
testUsingAD[3]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C, G] attr={} GT=[[1 A*/C AD 0,0],[1 A*/C AD 0,0]] filters=, 5.0) 0s passed
testUsingAD[4]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[3 A*/C DP 10 AD 9,1]] filters=, 5.0) 0s passed
testUsingAD[5]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 5,5],[2 A*/A* DP 10 AD 10,0]] filters=, 5.0) 0s passed
testUsingAD[6]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 5,5],[3 A*/C DP 10 AD 9,1]] filters=, 5.0) 0.001s passed
testUsingAD[7]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 10 AD 5,5],[3 A*/C DP 17 AD 8,2]] filters=, 2.5) 0s passed
testUsingAD[8]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C, G] attr={} GT=[[1 A*/C DP 10 AD 5,5],[2 A*/A* DP 10 AD 10,0],[3 A*/C DP 10 AD 9,1],[4 G/G DP 10 AD 1,9]] filters=, 2.5) 0s passed
testUsingAD[9]([VC test @ 20:10 Q50.00 of type=SNP alleles=[A*, C] attr={} GT=[[1 A*/C DP 70 AD 5,5]] filters=, 5.0) 0s passed
testUsingDP 0.001s passed
testUsingReads 0s passed
testVeryHighQD 0.232s passed

Standard error

21:26:05.380 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
21:26:05.380 DEBUG GenomeLocParser -  1 (16000 bp)
21:26:05.380 DEBUG GenomeLocParser -  2 (16000 bp)
21:26:05.380 DEBUG GenomeLocParser -  3 (16000 bp)
21:26:05.380 DEBUG GenomeLocParser -  4 (16000 bp)