Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelEngineUnitTest
Tests
Test |
Duration |
Result |
testComputeResponsibilities[0](15, 5, 5, [(HOM_REF,0.999), (F1R2_T,0.0010000000000000009)], [(HOM_REF,0.0), (F1R2_T,1.0)], 0.001) |
0.001s |
passed |
testComputeResponsibilities[1](15, 5, 5, [], [(HOM_REF,0.0), (F1R2_T,0.7)], 0.2) |
0s |
passed |
testComputeResponsibilities[2](50, 10, 10, [], [(F1R2_T,1.0)], 0.01) |
0s |
passed |
testComputeResponsibilities[3](50, 10, 5, [], [(SOMATIC_HET,1.0)], 0.2) |
0s |
passed |
testComputeResponsibilities[4](50, 25, 12, [], [(GERMLINE_HET,0.5)], 0.2) |
0s |
passed |
testMergeDesignMatrices |
0.007s |
passed |
testMergeHistograms |
0.007s |
passed |
testMoreComplicatedCase |
0.244s |
passed |
testReverseComplement |
0.388s |
passed |
testSimpleCase |
0.055s |
passed |
Standard error
[February 10, 2025 at 9:26:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1027604480