| Test |
Duration |
Result |
| testAnnotateComplexEvents[0](dDUP, DUP_chr1:280-420, [PREDICTED_PARTIAL_DISPERSED_DUP]) |
0.007s |
passed |
| testAnnotateComplexEvents[1](INVdup, INV_chr1:90-1010,DUP_chr1:890-1010, [PREDICTED_LOF, PREDICTED_PARTIAL_DISPERSED_DUP]) |
0.003s |
passed |
| testAnnotateComplexEvents[2](delINVdup, DEL_chr1:250-450,INV_chr1:450-650,DUP_chr1:610-650, [PREDICTED_LOF, PREDICTED_PARTIAL_DISPERSED_DUP]) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[0](chr1:350-550, PREDICTED_LOF, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.003s |
passed |
| testAnnotateIntervalSVTypes[10](chr1:150-750, PREDICTED_INTRAGENIC_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[11](chr1:220-280, PREDICTED_INTRONIC, PREDICTED_INTRONIC, PREDICTED_INTRONIC, PREDICTED_INTRONIC) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[12](chr1:750-950, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR) |
0.001s |
passed |
| testAnnotateIntervalSVTypes[13](chr1:50-150, PREDICTED_TSS_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[14](chr1:50-250, PREDICTED_TSS_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[15](chr1:50-550, PREDICTED_TSS_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[16](chr1:950-1500, PREDICTED_DUP_PARTIAL, PREDICTED_UTR, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_UTR) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[17](chr1:650-950, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR) |
0.001s |
passed |
| testAnnotateIntervalSVTypes[18](chr1:50-2000, PREDICTED_COPY_GAIN, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_INV_SPAN) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[19](chr1:750-790, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[1](chr1:320-360, PREDICTED_LOF, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[20](chr1:350-1200, PREDICTED_DUP_PARTIAL, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.001s |
passed |
| testAnnotateIntervalSVTypes[21](chr1:450-1300, PREDICTED_DUP_PARTIAL, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[2](chr1:550-750, PREDICTED_LOF, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[3](chr1:450-650, PREDICTED_INTRAGENIC_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[4](chr1:250-850, PREDICTED_INTRAGENIC_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[5](chr1:150-450, PREDICTED_INTRAGENIC_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[6](chr1:250-350, PREDICTED_PARTIAL_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.001s |
passed |
| testAnnotateIntervalSVTypes[7](chr1:350-650, PREDICTED_PARTIAL_EXON_DUP, PREDICTED_LOF, PREDICTED_MSV_EXON_OVERLAP, PREDICTED_LOF) |
0.001s |
passed |
| testAnnotateIntervalSVTypes[8](chr1:150-250, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR) |
0.002s |
passed |
| testAnnotateIntervalSVTypes[9](chr1:650-850, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_UTR) |
0.002s |
passed |
| testAnnotateNearestTranscriptionStartSite[0](chr1:1-50, A) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[1](chr2:105-110, B) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[2](chr2:155-160, B) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[3](chr2:160-195, C) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[4](chr2:3000-4000, D) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[5](chr3:33-33, E) |
0s |
passed |
| testAnnotateNearestTranscriptionStartSite[6](chr4:900-4000, null) |
0s |
passed |
| testAnnotatePointSVTypes[0](chr1:150-151, chr1:150-150, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotatePointSVTypes[1](chr1:250-251, chr1:250-250, PREDICTED_INTRONIC, PREDICTED_INTRONIC, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotatePointSVTypes[2](chr1:350-351, chr1:350-350, PREDICTED_LOF, PREDICTED_BREAKEND_EXONIC, PREDICTED_LOF) |
0.001s |
passed |
| testAnnotatePointSVTypes[3](chr1:600-601, chr1:600-600, PREDICTED_LOF, PREDICTED_BREAKEND_EXONIC, PREDICTED_LOF) |
0.002s |
passed |
| testAnnotatePointSVTypes[4](chr1:100-101, chr1:100-100, PREDICTED_UTR, PREDICTED_UTR, PREDICTED_LOF) |
0.001s |
passed |
| testAnnotateStructuralVariant[0]([VC source @ chr1:10-50 Q. of type=SYMBOLIC alleles=[N*, <CNV>] attr={SVLEN=40} GT=[] filters=, {PREDICTED_PROMOTER=[EMMA1], PREDICTED_INTERGENIC=true}) |
0.018s |
passed |
| testAnnotateStructuralVariant[10]([VC source @ chr1:1300-1800 Q. of type=SYMBOLIC alleles=[N*, <INS:LINE1>] attr={SVLEN=42} GT=[] filters=, {PREDICTED_NONCODING_BREAKPOINT=[Enhancer], PREDICTED_NEAREST_TSS=[EMMA1], PREDICTED_INTERGENIC=true}) |
0.003s |
passed |
| testAnnotateStructuralVariant[11]([VC source @ chr1:2000-2200 Q. of type=SYMBOLIC alleles=[N*, <DUP>] attr={SVLEN=42} GT=[] filters=, {PREDICTED_DUP_PARTIAL=[EMMA2], PREDICTED_INTERGENIC=false}) |
0.003s |
passed |
| testAnnotateStructuralVariant[12]([VC source @ chr1:3100-3300 Q. of type=SYMBOLIC alleles=[N*, <DUP>] attr={SVLEN=200} GT=[] filters=, {PREDICTED_PROMOTER=[EMMA2], PREDICTED_INTERGENIC=true}) |
0.003s |
passed |
| testAnnotateStructuralVariant[13]([VC source @ chr1:10-1010 Q. of type=SYMBOLIC alleles=[N*, <CTX>] attr={CHR2=chr1, CPX_INTERVALS=[INV_chr1:10-1010], CPX_TYPE=CTX_INV, END2=2300, SVLEN=-1} GT=[] filters=, {PREDICTED_INV_SPAN=[EMMA1], PREDICTED_LOF=[EMMA2], PREDICTED_INTERGENIC=false, PREDICTED_NONCODING_SPAN=[DNase]}) |
0.003s |
passed |
| testAnnotateStructuralVariant[14]([VC source @ chr1:30 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chr1, END2=3030, STRANDS=-+} GT=[] filters=, {PREDICTED_PROMOTER=[EMMA1, EMMA2], PREDICTED_INTERGENIC=true}) |
0.003s |
passed |
| testAnnotateStructuralVariant[1]([VC source @ chr1:10-11 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DUP_chr1:2000-3500], CPX_TYPE=dDUP, SVLEN=1500} GT=[] filters=, {PREDICTED_COPY_GAIN=[EMMA2], PREDICTED_PROMOTER=[EMMA1], PREDICTED_INTERGENIC=false}) |
0.004s |
passed |
| testAnnotateStructuralVariant[2]([VC source @ chr1:20-3500 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DUP_chr1:20-70, INV_chr1:20-3500, DUP_chr1:2000-3500], CPX_TYPE=dupINVdup, SVLEN=3480} GT=[] filters=, {PREDICTED_INV_SPAN=[EMMA1], PREDICTED_COPY_GAIN=[EMMA2], PREDICTED_INTERGENIC=false, PREDICTED_NONCODING_SPAN=[DNase, Enhancer]}) |
0.003s |
passed |
| testAnnotateStructuralVariant[3]([VC source @ chr1:1101-1102 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DUP_chr1:10-60, INV_chr1:10-60, DEL_chr1:1100-1700], CPX_TYPE=dDUP_iDEL, SVLEN=700} GT=[] filters=, {PREDICTED_NEAREST_TSS=[EMMA1], PREDICTED_INTERGENIC=true, PREDICTED_NONCODING_SPAN=[Enhancer]}) |
0.003s |
passed |
| testAnnotateStructuralVariant[4]([VC source @ chr1:1101-1102 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[INV_chr1:10-60, DEL_chr1:1100-1700, INS_chr1:10-60], CPX_TYPE=INS_iDEL, SVLEN=700} GT=[] filters=, {PREDICTED_NEAREST_TSS=[EMMA1], PREDICTED_INTERGENIC=true, PREDICTED_NONCODING_SPAN=[Enhancer]}) |
0.003s |
passed |
| testAnnotateStructuralVariant[5]([VC source @ chr1:450-3100 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DUP_chr1:450-2200, INV_chr1:450-3100], CPX_TYPE=dupINV, SVLEN=2650} GT=[] filters=, {PREDICTED_PARTIAL_DISPERSED_DUP=[EMMA1, EMMA2], PREDICTED_LOF=[EMMA2], PREDICTED_INTERGENIC=false}) |
0.003s |
passed |
| testAnnotateStructuralVariant[6]([VC source @ chr1:1100 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DUP_chr1:450-1000], CPX_TYPE=dDUP, SVLEN=550} GT=[] filters=, {PREDICTED_NEAREST_TSS=[EMMA1], PREDICTED_PARTIAL_DISPERSED_DUP=[EMMA1], PREDICTED_INTERGENIC=true}) |
0.003s |
passed |
| testAnnotateStructuralVariant[7]([VC source @ chr1:1400-1900 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CPX_INTERVALS=[DEL_chr1:1400-1500, INV_chr1:1500-1900], CPX_TYPE=delINV, SVLEN=500} GT=[] filters=, {PREDICTED_NONCODING_BREAKPOINT=[Enhancer], PREDICTED_NEAREST_TSS=[EMMA2], PREDICTED_INTERGENIC=true}) |
0.003s |
passed |
| testAnnotateStructuralVariant[8]([VC source @ chr1:50-450 Q. of type=SYMBOLIC alleles=[N*, <DEL>] attr={SVLEN=400} GT=[] filters=, {PREDICTED_NONCODING_BREAKPOINT=[DNase], PREDICTED_LOF=[EMMA1], PREDICTED_INTERGENIC=false}) |
0.003s |
passed |
| testAnnotateStructuralVariant[9]([VC source @ chr1:1100-1700 Q. of type=SYMBOLIC alleles=[N*, <INV>] attr={SVLEN=600} GT=[] filters=, {PREDICTED_NEAREST_TSS=[EMMA1], PREDICTED_INTERGENIC=true, PREDICTED_NONCODING_SPAN=[Enhancer]}) |
0.003s |
passed |
| testGetSVTypeAndSegments[0]([VC source @ chr2:86263976-86263977 Q. of type=SYMBOLIC alleles=[N*, <CTX>] attr={CHR2=chr19, CPX_TYPE=CTX_PP/QQ, END2=424309} GT=[] filters=, CTX_PP_QQ, CTX, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@23277a9d, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@23277e7d, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@551a0f6d, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@551a134d], null) |
0s |
passed |
| testGetSVTypeAndSegments[10]([VC source @ chr22:10532563-10532611 Q. of type=SYMBOLIC alleles=[N*, <INS:ME:ALU>] attr={CHR2=chr22, SVLEN=245} GT=[] filters=, null, INS, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@552158ca], null) |
0s |
passed |
| testGetSVTypeAndSegments[11]([VC source @ chr22:10572758-10572788 Q. of type=SYMBOLIC alleles=[N*, <INS>] attr={CHR2=chr22, SVLEN=57} GT=[] filters=, null, INS, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@5781c46a], null) |
0s |
passed |
| testGetSVTypeAndSegments[12]([VC source @ chr22:10717890 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chr22, STRANDS=-+, SVLEN=5170} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@37183b46, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@37667d06], [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@9954a641]) |
0s |
passed |
| testGetSVTypeAndSegments[13]([VC source @ chr22:10774600-10784500 Q. of type=SYMBOLIC alleles=[N*, <CNV>] attr={CHR2=chr22, SVLEN=9900} GT=[] filters=, null, CNV, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@65f97016], null) |
0s |
passed |
| testGetSVTypeAndSegments[14]([VC source @ chr22:10930458 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chr22, END2=11564561, STRANDS=--, SVLEN=634103} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@43a9d046, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@69280d66], null) |
0s |
passed |
| testGetSVTypeAndSegments[15]([VC source @ chr22:17636024 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chr22, STRANDS=+-, SVLEN=10709} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@d0261486, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@d0c82de6], [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@fd92a5b5]) |
0.001s |
passed |
| testGetSVTypeAndSegments[16]([VC source @ chr22:18971159-18971435 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CHR2=chr22, CPX_INTERVALS=[INV_chr22:20267228-20267614, DUP_chr22:20267228-20267614], CPX_TYPE=dDUP, SVLEN=386} GT=[] filters=, dDUP, CPX, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@cdf407b1, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@4816004a], null) |
0s |
passed |
| testGetSVTypeAndSegments[17]([VC source @ chr22:22120897 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chrX, END2=126356858, STRANDS=++, SVLEN=-1} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@d9545766, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@e71d49e4], null) |
0s |
passed |
| testGetSVTypeAndSegments[18]([VC source @ chr22:22196261 Q. of type=SYMBOLIC alleles=[N*, <BND>] attr={CHR2=chr22, STRANDS=+-, SVLEN=708725} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@ddc91ae6, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@7b0e046], null) |
0s |
passed |
| testGetSVTypeAndSegments[19]([VC source @ chr22:22196261 Q. of type=SYMBOLIC alleles=[A*, A[chr22:22904986[] attr={STRANDS=+-} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@ddc91ae6], null) |
0s |
passed |
| testGetSVTypeAndSegments[1]([VC source @ chr2:86263976 Q. of type=SYMBOLIC alleles=[G*, G]chr19:424309]] attr={CPX_TYPE=CTX_PP/QQ, END2=424309} GT=[] filters=, CTX_PP_QQ, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@23277a9d], null) |
0s |
passed |
| testGetSVTypeAndSegments[20]([VC source @ chr22:22904986 Q. of type=SYMBOLIC alleles=[T*, ]chr22:22196261]T] attr={STRANDS=+-} GT=[] filters=, null, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@7b0e046], null) |
0s |
passed |
| testGetSVTypeAndSegments[21]([VC source @ chr22:36533058-36538234 Q. of type=SYMBOLIC alleles=[N*, <CPX>] attr={CHR2=chr22, CPX_INTERVALS=[DUP_chr22:36533058-36533299, INV_chr22:36533058-36538234], CPX_TYPE=dupINV, SVLEN=5176} GT=[] filters=, dupINV, CPX, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@8fb74162, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@213f0c9f], null) |
0s |
passed |
| testGetSVTypeAndSegments[2]([VC source @ chr2:86263977 Q. of type=SYMBOLIC alleles=[A*, [chr19:424310[A] attr={CPX_TYPE=CTX_PP/QQ, END2=424309, SVLEN=-1} GT=[] filters=, CTX_PP_QQ, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@23277e7d], null) |
0s |
passed |
| testGetSVTypeAndSegments[3]([VC source @ chr4:21923233-22506191 Q. of type=SYMBOLIC alleles=[N*, <CTX>] attr={CHR2=chr8, CPX_INTERVALS=[INV_chr4:21923233-22506191], CPX_TYPE=CTX_INV, END2=107912008} GT=[] filters=, CTX_INV, CTX, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@bcfe8752, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@46d3bf7f, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@694bd1bf, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@2327a6a3, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@2327aa83], null) |
0s |
passed |
| testGetSVTypeAndSegments[4]([VC source @ chr2:205522308-205522384 Q. of type=SYMBOLIC alleles=[N*, <INV>] attr={CHR2=chr2, SVLEN=76} GT=[] filters=, null, INV, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@23ba5f92], null) |
0s |
passed |
| testGetSVTypeAndSegments[5]([VC source @ chr19:424309 Q. of type=SYMBOLIC alleles=[T*, T]chr2:86263976]] attr={CPX_TYPE=CTX_PP/QQ, END2=424309} GT=[] filters=, CTX_PP_QQ, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@551a0f6d], null) |
0.001s |
passed |
| testGetSVTypeAndSegments[6]([VC source @ chr19:424310 Q. of type=SYMBOLIC alleles=[C*, [chr2:86263977[C] attr={CPX_TYPE=CTX_PP/QQ, END2=424309} GT=[] filters=, CTX_PP_QQ, BND, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@551a134d], null) |
0s |
passed |
| testGetSVTypeAndSegments[7]([VC source @ chr22:10510000-10694100 Q. of type=SYMBOLIC alleles=[N*, <DEL>] attr={CHR2=chr22, SVLEN=184100} GT=[] filters=, null, DEL, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@588c0b46], null) |
0s |
passed |
| testGetSVTypeAndSegments[8]([VC source @ chr22:10510000-10694100 Q. of type=SYMBOLIC alleles=[N*, <DEL:ME:LINE1>] attr={CHR2=chr22, SVLEN=184100} GT=[] filters=, null, DEL, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@588c0b46], null) |
0s |
passed |
| testGetSVTypeAndSegments[9]([VC source @ chr22:10524000-10710000 Q. of type=SYMBOLIC alleles=[N*, <DUP>] attr={CHR2=chr22, SVLEN=186000} GT=[] filters=, null, DUP, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@8e3353e3], null) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[0](dDUP, DUP_chr1:280-420, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@1a2757de]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[10](delINVdel, DEL_chr2:62384663-62387814,INV_chr2:62387814-62388322,DEL_chr2:62388322-62390272, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@4dfd2813, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@147fffa2, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@4e33f944]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[1](dupINV, DUP_chr1:44355904-44356327,INV_chr1:44355904-44357498, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@58ce1523, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@ea56c3ca]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[2](dupINVdup, DUP_chr1:247660974-248129213,INV_chr1:247660974-248587216,DUP_chr1:248520217-248587216, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@4ea708fb, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@80b75bf3, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@fbb40761]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[3](dDUP_iDEL, DUP_chr2:131488885-131489335,INV_chr2:131488885-131489335,DEL_chr2:130185450-130185720, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@78c985c9, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@f6e53cd4]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[4](dDUP_iDEL, DUP_chr3:95751919-95752156,DEL_chr3:95746923-95749272, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@37bd04bf, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@29fec76]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[5](INS_iDEL, DEL_chr3:60521333-60521483, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@dfcf08ed]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[6](delINV, DEL_chr2:120379742-120383130,INV_chr2:120383130-120384123, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@b31c77e6, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@79a303dd]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[7](INVdel, INV_chr2:122719025-122719803,DEL_chr2:122719803-122724929, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@3c0b2f4, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@3d7a22bc]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[8](delINVdup, DEL_chr2:54002577-54003019,INV_chr2:54003019-54006204,DUP_chr2:54006057-54006204, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@5e5e98c8, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@93659a98, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@24bae960]) |
0s |
passed |
| testGetSegmentsFromComplexIntervals[9](dupINVdel, DUP_chr2:4157678-4157846,INV_chr2:4157678-4165085,DEL_chr2:4165085-4175888, [org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@ff8b883, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@db9b65ef, org.broadinstitute.hellbender.tools.walkers.sv.SVSegment@a18088b7]) |
0s |
passed |
| testIncludesDispersedDuplication[0](null, false) |
0s |
passed |
| testIncludesDispersedDuplication[10](dDUP_iDEL, true) |
0s |
passed |
| testIncludesDispersedDuplication[11](INS_iDEL, false) |
0s |
passed |
| testIncludesDispersedDuplication[12](CTX_PP_QQ, false) |
0s |
passed |
| testIncludesDispersedDuplication[13](CTX_PQ_QP, false) |
0s |
passed |
| testIncludesDispersedDuplication[14](CTX_INV, false) |
0s |
passed |
| testIncludesDispersedDuplication[1](delINV, false) |
0s |
passed |
| testIncludesDispersedDuplication[2](INVdel, false) |
0.001s |
passed |
| testIncludesDispersedDuplication[3](dupINV, true) |
0s |
passed |
| testIncludesDispersedDuplication[4](INVdup, true) |
0s |
passed |
| testIncludesDispersedDuplication[5](delINVdel, false) |
0s |
passed |
| testIncludesDispersedDuplication[6](dupINVdup, true) |
0s |
passed |
| testIncludesDispersedDuplication[7](delINVdup, true) |
0s |
passed |
| testIncludesDispersedDuplication[8](dupINVdel, true) |
0s |
passed |
| testIncludesDispersedDuplication[9](dDUP, true) |
0s |
passed |
| testIsIntergenic[0]({PREDICTED_TSS_DUP=[HES4], PREDICTED_PARTIAL_DISPERSED_DUP=[SAMD11]}, false) |
0s |
passed |
| testIsIntergenic[1]({PREDICTED_PARTIAL_DISPERSED_DUP=[SAMD11]}, true) |
0s |
passed |
| testIsIntergenic[2]({PREDICTED_NONCODING_BREAKPOINT=[Enhancer], PREDICTED_PROMOTER=[RP1]}, true) |
0s |
passed |
| testIsIntergenic[3]({}, true) |
0s |
passed |
| testSortVariantConsequenceDict |
0s |
passed |
| testVariantFeatureComparisons[0](chr1:1-2000, chr2:100-200, false, 0) |
0s |
passed |
| testVariantFeatureComparisons[1](chrX:6000-8000, chrX:30-400, false, 0) |
0s |
passed |
| testVariantFeatureComparisons[2](chr3:10000-30000, chr3:9000-20000, false, 1) |
0s |
passed |
| testVariantFeatureComparisons[3](chrY:500-700, chrY:600-800, false, 1) |
0s |
passed |
| testVariantFeatureComparisons[4](chr22:40-90, chr22:25-700, false, 2) |
0s |
passed |
| testVariantFeatureComparisons[5](chr19:33-33, chr19:22-44, false, 2) |
0s |
passed |
| testVariantFeatureComparisons[6](chr10:900-4000, chr10:2000-2200, true, 0) |
0s |
passed |