Class org.broadinstitute.hellbender.utils.baq.BAQUnitTest

13

tests

0

failures

0

ignored

0.101s

duration

100%

successful

Tests

Test Duration Result
testBAQOverwritesExistingTagWithNull 0.026s passed
testBAQQualRange 0.007s passed
testBAQWithCigarAndRefLookup[0](GCTGCTCCTGGTACTGCTGGATGAGGGCCTCGATGAAGCTAAGCTTTTTCTCCTGCTCCTGCGTGATCCGCTGCAG) 0s passed
testBAQWithCigarAndRefLookup[1](GCTTTTTCTCCTCCTG) 0s passed
testBAQWithCigarAndRefLookup[2](TTCAAGATTTCAAAGGCTCTTAACTGCTCAAGATAATTTTTTTTTTTTGTAGACAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCCACCCACCACCACGCCTGGCCTAATTTTTTTGTATTTTTAGTAGAGA) 0.014s passed
testBAQWithCigarAndRefLookup[3](AGTAGCTGGGACTACAGGCACCCACCACCACGCCTG) 0.007s passed
testBAQWithCigarAndRefLookup[4](CCACGCTTGGCAAAGTTTTCCGTACGTTTAGCCGAG) 0.009s passed
testBAQWithProvidedReference[0](GCTGCTCCTGGTACTGCTGGATGAGGGCCTCGATGAAGCTAAGCTTTTTCTCCTGCTCCTGCGTGATCCGCTGCAG) 0.007s passed
testBAQWithProvidedReference[1](GCTTTTTCTCCTCCTG) 0.008s passed
testBAQWithProvidedReference[2](TTCAAGATTTCAAAGGCTCTTAACTGCTCAAGATAATTTTTTTTTTTTGTAGACAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCCACCCACCACCACGCCTGGCCTAATTTTTTTGTATTTTTAGTAGAGA) 0.010s passed
testBAQWithProvidedReference[3](AGTAGCTGGGACTACAGGCACCCACCACCACGCCTG) 0.007s passed
testBAQWithProvidedReference[4](CCACGCTTGGCAAAGTTTTCCGTACGTTTAGCCGAG) 0.006s passed
testGetReferenceWindowForReadStopsAtContigStart 0s passed

Standard output

----------------------------------------
reads   : TTCAAGATTTCAAAGGCTCTTAACTGCTCAAGATAATTTTTTTTTTTTGTAGACAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCCACCCACCACCACGCCTGGCCTAATTTTTTTGTATTTTTAGTAGAGA
in-quals:>IHFECEBDBBCBCABABAADBD?AABBACEABABC?>?B>@A@@>A?B3BBC?CBDBAABBBBBAABAABBABDACCCBCDAACBCBABBB:ABDBACBBDCCCCABCDCCBCC@@;?<B@BC;CBBBAB=;A>ACBABBBABBCA@@<?>>AAA<CA@AABBABCC?BB8@<@C<>5;<A5=A;>=64>???B>=6497<<;;<;>2?>BA@??A6<<A59
bq-quals:>EHFECEBDBBCBCABABAADBD?AABBACEABABC?>?B>@A@@>A?838BC?CBDBAABBBBBAABAABBABDACCCBCDAACBCBABBB:ABDBACBBDCCCCABCDCCBCC@@;?<B@BC;CBBBAB=;A>ACBABBBABBCA@@<?>>AAA<CA@AABBABCC?BB8@<@%<>5;<A5=A;>=64>???B;86497<<;;<;>2?>BA@??A6<<A59
----------------------------------------
reads   : AGTAGCTGGGACTACAGGCACCCACCACCACGCCTG
in-quals:A?>>@>AA?@@>A?>A@?>@>>?=>?'>?=>7=?A9
bq-quals:A?>>@>AA?@@>A?>A@?>@>>?=>?'>?=>7=?A9
----------------------------------------
reads   : CCACGCTTGGCAAAGTTTTCCGTACGTTTAGCCGAG
in-quals:33'/(7+270&4),(&&-)$&,%7$',-/61(,6?8
bq-quals:33'/(7+270&4),(&&-)$&,%7$',-/61(,6?8
----------------------------------------
reads   : GCTGCTCCTGGTACTGCTGGATGAGGGCCTCGATGAAGCTAAGCTTTTTCTCCTGCTCCTGCGTGATCCGCTGCAG
in-quals:?BACCBDDDFFBCFFHHFIHFEIFHIGHHGHBFEIFGIIGEGIIHGGGIHHIIHIIHIIHGICCIGEII@IGIHCG
bq-quals:?BACCBDDDFFBCFFHHFIHFEIFHIGHHGHBFEIFGIIGEGII410..0HIIHIIHIIHGICCIGEII@IGIHCE
----------------------------------------
reads   : GCTTTTTCTCCTCCTG
in-quals:IIHGGGIHHIIHHIIH
bq-quals:EI410..0HIIHHIIE
----------------------------------------
reads   : TTCAAGATTTCAAAGGCTCTTAACTGCTCAAGATAATTTTTTTTTTTTGTAGACAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCCACCCACCACCACGCCTGGCCTAATTTTTTTGTATTTTTAGTAGAGA
in-quals:>IHFECEBDBBCBCABABAADBD?AABBACEABABC?>?B>@A@@>A?B3BBC?CBDBAABBBBBAABAABBABDACCCBCDAACBCBABBB:ABDBACBBDCCCCABCDCCBCC@@;?<B@BC;CBBBAB=;A>ACBABBBABBCA@@<?>>AAA<CA@AABBABCC?BB8@<@C<>5;<A5=A;>=64>???B>=6497<<;;<;>2?>BA@??A6<<A59
bq-quals:>EHFECEBDBBCBCABABAADBD?AABBACEABABC?>?B>@A@@>A?838BC?CBDBAABBBBBAABAABBABDACCCBCDAACBCBABBB:ABDBACBBDCCCCABCDCCBCC@@;?<B@BC;CBBBAB=;A>ACBABBBABBCA@@<?>>AAA<CA@AABBABCC?BB8@<@%<>5;<A5=A;>=64>???B;86497<<;;<;>2?>BA@??A6<<A59
----------------------------------------
reads   : AGTAGCTGGGACTACAGGCACCCACCACCACGCCTG
in-quals:A?>>@>AA?@@>A?>A@?>@>>?=>?'>?=>7=?A9
bq-quals:A?>>@>AA?@@>A?>A@?>@>>?=>?'>?=>7=?A9
----------------------------------------
reads   : CCACGCTTGGCAAAGTTTTCCGTACGTTTAGCCGAG
in-quals:33'/(7+270&4),(&&-)$&,%7$',-/61(,6?8
bq-quals:33'/(7+270&4),(&&-)$&,%7$',-/61(,6?8