Class org.broadinstitute.hellbender.utils.fasta.CachingIndexedFastaSequenceFileUnitTest

all > org.broadinstitute.hellbender.utils.fasta > CachingIndexedFastaSequenceFileUnitTest
40

tests
0

failures
0

ignored
17.788s

duration
100%

successful

Tests

Test Duration Result
testCachingIndexedFastaReaderSequential1[0](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 1) 0.218s passed
testCachingIndexedFastaReaderSequential1[10](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 10) 0.102s passed
testCachingIndexedFastaReaderSequential1[11](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 100) 0.115s passed
testCachingIndexedFastaReaderSequential1[12](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 1) 0.199s passed
testCachingIndexedFastaReaderSequential1[13](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 10) 0.202s passed
testCachingIndexedFastaReaderSequential1[14](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 100) 9.412s passed
testCachingIndexedFastaReaderSequential1[15](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.112s passed
testCachingIndexedFastaReaderSequential1[16](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.110s passed
testCachingIndexedFastaReaderSequential1[17](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.122s passed
testCachingIndexedFastaReaderSequential1[1](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 10) 0.120s passed
testCachingIndexedFastaReaderSequential1[2](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 100) 0.107s passed
testCachingIndexedFastaReaderSequential1[3](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 1) 0.097s passed
testCachingIndexedFastaReaderSequential1[4](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 10) 0.095s passed
testCachingIndexedFastaReaderSequential1[5](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 100) 0.202s passed
testCachingIndexedFastaReaderSequential1[6](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.092s passed
testCachingIndexedFastaReaderSequential1[7](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.095s passed
testCachingIndexedFastaReaderSequential1[8](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.104s passed
testCachingIndexedFastaReaderSequential1[9](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 1) 0.141s passed
testCachingIndexedFastaReaderTwoStage[0](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 1) 0.017s passed
testCachingIndexedFastaReaderTwoStage[10](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 10) 0.013s passed
testCachingIndexedFastaReaderTwoStage[11](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 100) 0.013s passed
testCachingIndexedFastaReaderTwoStage[12](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 1) 0.948s passed
testCachingIndexedFastaReaderTwoStage[13](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 10) 0.947s passed
testCachingIndexedFastaReaderTwoStage[14](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 100) 0.957s passed
testCachingIndexedFastaReaderTwoStage[15](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.985s passed
testCachingIndexedFastaReaderTwoStage[16](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.979s passed
testCachingIndexedFastaReaderTwoStage[17](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.977s passed
testCachingIndexedFastaReaderTwoStage[1](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 10) 0.016s passed
testCachingIndexedFastaReaderTwoStage[2](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 100) 0.017s passed
testCachingIndexedFastaReaderTwoStage[3](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 1) 0.037s passed
testCachingIndexedFastaReaderTwoStage[4](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 10) 0.036s passed
testCachingIndexedFastaReaderTwoStage[5](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 100, 100) 0.037s passed
testCachingIndexedFastaReaderTwoStage[6](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.044s passed
testCachingIndexedFastaReaderTwoStage[7](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.044s passed
testCachingIndexedFastaReaderTwoStage[8](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.046s passed
testCachingIndexedFastaReaderTwoStage[9](/gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta.gz, /gatkCloneMountPoint/src/test/resources/exampleFASTA.fasta, -1, 1) 0.012s passed
testFailOnBadBase 0.006s passed
testIupacChanges 0.003s passed
testMixedCasesInExample 0.008s passed
testNonexistentReference 0.001s passed