Class org.broadinstitute.hellbender.utils.iterators.SamReaderQueryingIteratorUnitTest

19

tests

0

failures

0

ignored

0.020s

duration

100%

successful

Tests

Test Duration Result
testSamReaderQueryingIterator[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000], false, [a, b, c, d]) 0.005s passed
testSamReaderQueryingIterator[10](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, null, true, []) 0.001s passed
testSamReaderQueryingIterator[11](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [], true, []) 0s passed
testSamReaderQueryingIterator[12](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, false, []) 0.001s passed
testSamReaderQueryingIterator[13](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [], false, []) 0s passed
testSamReaderQueryingIterator[14](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000011-10000013], false, [a, b, c, d, e, f, f]) 0.001s passed
testSamReaderQueryingIterator[15](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000011-10000013], true, [a, b, c, d, e, f, f, g, h, h, i, i]) 0.002s passed
testSamReaderQueryingIterator[16](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000009-10000011], false, [a, b, c, d, e]) 0.001s passed
testSamReaderQueryingIterator[17](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, [20:10000009-10000011], true, [a, b, c, d, e, g, h, h, i, i]) 0.001s passed
testSamReaderQueryingIterator[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000], true, [a, b, c, d, u1, u2, u3, u4, u5]) 0.002s passed
testSamReaderQueryingIterator[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000, 2:500-700, 4:700-701], false, [a, b, c, d, f, g, h, k]) 0.001s passed
testSamReaderQueryingIterator[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:200-1000, 2:500-700, 4:700-701], true, [a, b, c, d, f, g, h, k, u1, u2, u3, u4, u5]) 0.001s passed
testSamReaderQueryingIterator[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:3000-4000], false, []) 0s passed
testSamReaderQueryingIterator[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [1:3000-4000], true, [u1, u2, u3, u4, u5]) 0.001s passed
testSamReaderQueryingIterator[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:3000-4000], true, []) 0.001s passed
testSamReaderQueryingIterator[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1.bam, [1:200-1000], true, [a, b, c, d]) 0.001s passed
testSamReaderQueryingIterator[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, true, [u1, u2, u3, u4, u5]) 0.001s passed
testSamReaderQueryingIterator[9](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, [], true, [u1, u2, u3, u4, u5]) 0s passed
testThrowOnNullReader 0s passed