Class org.broadinstitute.hellbender.utils.samples.PedReaderUnitTest
|
100%
successful |
Tests
Test | Duration | Result |
---|---|---|
testPedReaderTagParsing1 | 0s | passed |
testPedReaderTagParsing2 | 0s | passed |
testPedReaderTagParsing[0](TestDataProvider()) | 0.001s | passed |
testPedReaderTagParsing[1](TestDataProvider()) | 0s | passed |
testPedReaderTagParsing[2](TestDataProvider()) | 0s | passed |
testPedReaderTagParsing[3](TestDataProvider()) | 0s | passed |
testPedReaderTagParsing[4](TestDataProvider()) | 0s | passed |
testPedReaderTagParsing[5](TestDataProvider()) | 0s | passed |
testPedReaderTagParsing[6](TestDataProvider()) | 0s | passed |
testPedReaderWithComments[0](TestDataProvider(singleRecordMale)) | 0s | passed |
testPedReaderWithComments[10](TestDataProvider(implicitTrio)) | 0s | passed |
testPedReaderWithComments[11](TestDataProvider(partialTrio)) | 0.001s | passed |
testPedReaderWithComments[12](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReaderWithComments[13](TestDataProvider(singleRecordMale)) | 0s | passed |
testPedReaderWithComments[14](TestDataProvider(singleRecordFemale)) | 0s | passed |
testPedReaderWithComments[15](TestDataProvider(singleRecordMissingGender)) | 0.001s | passed |
testPedReaderWithComments[16](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReaderWithComments[17](TestDataProvider(singleRecordUnaffected)) | 0s | passed |
testPedReaderWithComments[18](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReaderWithComments[19](TestDataProvider(singleRecordMissingAffection0)) | 0s | passed |
testPedReaderWithComments[1](TestDataProvider(singleRecordFemale)) | 0s | passed |
testPedReaderWithComments[20](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReaderWithComments[21](TestDataProvider(multipleUnrelatedExtraLine)) | 0.001s | passed |
testPedReaderWithComments[22](TestDataProvider(explicitTrio)) | 0s | passed |
testPedReaderWithComments[23](TestDataProvider(implicitTrio)) | 0.001s | passed |
testPedReaderWithComments[24](TestDataProvider(partialTrio)) | 0s | passed |
testPedReaderWithComments[25](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReaderWithComments[2](TestDataProvider(singleRecordMissingGender)) | 0s | passed |
testPedReaderWithComments[3](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReaderWithComments[4](TestDataProvider(singleRecordUnaffected)) | 0.001s | passed |
testPedReaderWithComments[5](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReaderWithComments[6](TestDataProvider(singleRecordMissingAffection0)) | 0s | passed |
testPedReaderWithComments[7](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReaderWithComments[8](TestDataProvider(multipleUnrelatedExtraLine)) | 0.001s | passed |
testPedReaderWithComments[9](TestDataProvider(explicitTrio)) | 0s | passed |
testPedReaderWithMissing[0](TestDataProvider(missingFam)) | 0s | passed |
testPedReaderWithMissing[1](TestDataProvider(missingParents)) | 0s | passed |
testPedReaderWithMissing[2](TestDataProvider(missingSex)) | 0s | passed |
testPedReaderWithMissing[3](TestDataProvider(missingPhenotype)) | 0s | passed |
testPedReaderWithMissing[4](TestDataProvider(missingEverythingButGender)) | 0.001s | passed |
testPedReaderWithSemicolons[0](TestDataProvider(singleRecordMale)) | 0s | passed |
testPedReaderWithSemicolons[10](TestDataProvider(implicitTrio)) | 0.001s | passed |
testPedReaderWithSemicolons[11](TestDataProvider(partialTrio)) | 0s | passed |
testPedReaderWithSemicolons[12](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReaderWithSemicolons[13](TestDataProvider(singleRecordMale)) | 0s | passed |
testPedReaderWithSemicolons[14](TestDataProvider(singleRecordFemale)) | 0s | passed |
testPedReaderWithSemicolons[15](TestDataProvider(singleRecordMissingGender)) | 0s | passed |
testPedReaderWithSemicolons[16](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReaderWithSemicolons[17](TestDataProvider(singleRecordUnaffected)) | 0.001s | passed |
testPedReaderWithSemicolons[18](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReaderWithSemicolons[19](TestDataProvider(singleRecordMissingAffection0)) | 0s | passed |
testPedReaderWithSemicolons[1](TestDataProvider(singleRecordFemale)) | 0s | passed |
testPedReaderWithSemicolons[20](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReaderWithSemicolons[21](TestDataProvider(multipleUnrelatedExtraLine)) | 0s | passed |
testPedReaderWithSemicolons[22](TestDataProvider(explicitTrio)) | 0s | passed |
testPedReaderWithSemicolons[23](TestDataProvider(implicitTrio)) | 0s | passed |
testPedReaderWithSemicolons[24](TestDataProvider(partialTrio)) | 0s | passed |
testPedReaderWithSemicolons[25](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReaderWithSemicolons[26](TestDataProvider(singleRecordMale)) | 0s | passed |
testPedReaderWithSemicolons[27](TestDataProvider(singleRecordFemale)) | 0s | passed |
testPedReaderWithSemicolons[28](TestDataProvider(singleRecordMissingGender)) | 0s | passed |
testPedReaderWithSemicolons[29](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReaderWithSemicolons[2](TestDataProvider(singleRecordMissingGender)) | 0.001s | passed |
testPedReaderWithSemicolons[30](TestDataProvider(singleRecordUnaffected)) | 0.001s | passed |
testPedReaderWithSemicolons[31](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReaderWithSemicolons[32](TestDataProvider(singleRecordMissingAffection0)) | 0s | passed |
testPedReaderWithSemicolons[33](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReaderWithSemicolons[34](TestDataProvider(multipleUnrelatedExtraLine)) | 0s | passed |
testPedReaderWithSemicolons[35](TestDataProvider(explicitTrio)) | 0s | passed |
testPedReaderWithSemicolons[36](TestDataProvider(implicitTrio)) | 0s | passed |
testPedReaderWithSemicolons[37](TestDataProvider(partialTrio)) | 0s | passed |
testPedReaderWithSemicolons[38](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReaderWithSemicolons[3](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReaderWithSemicolons[4](TestDataProvider(singleRecordUnaffected)) | 0s | passed |
testPedReaderWithSemicolons[5](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReaderWithSemicolons[6](TestDataProvider(singleRecordMissingAffection0)) | 0.001s | passed |
testPedReaderWithSemicolons[7](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReaderWithSemicolons[8](TestDataProvider(multipleUnrelatedExtraLine)) | 0s | passed |
testPedReaderWithSemicolons[9](TestDataProvider(explicitTrio)) | 0s | passed |
testPedReader[0](TestDataProvider(singleRecordMale)) | 0.002s | passed |
testPedReader[10](TestDataProvider(implicitTrio)) | 0.001s | passed |
testPedReader[11](TestDataProvider(partialTrio)) | 0s | passed |
testPedReader[12](TestDataProvider(bigPedigree)) | 0s | passed |
testPedReader[1](TestDataProvider(singleRecordFemale)) | 0.001s | passed |
testPedReader[2](TestDataProvider(singleRecordMissingGender)) | 0s | passed |
testPedReader[3](TestDataProvider(singleRecordAffected)) | 0s | passed |
testPedReader[4](TestDataProvider(singleRecordUnaffected)) | 0s | passed |
testPedReader[5](TestDataProvider(singleRecordMissingAffection-9)) | 0s | passed |
testPedReader[6](TestDataProvider(singleRecordMissingAffection0)) | 0s | passed |
testPedReader[7](TestDataProvider(multipleUnrelated)) | 0s | passed |
testPedReader[8](TestDataProvider(multipleUnrelatedExtraLine)) | 0s | passed |
testPedReader[9](TestDataProvider(explicitTrio)) | 0s | passed |
Standard error
21:30:13.955 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.957 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.957 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.958 WARN PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.958 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.958 WARN PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.958 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.958 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.958 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.958 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.958 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.958 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.959 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.959 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.959 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.959 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1 fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.959 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.959 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1 fam2 s2 0 0 2 2 " with missing fields: [] 21:30:13.959 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.959 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2 fam1 dad 0 0 1 1 fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.960 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.960 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.960 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.960 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2 fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.960 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.960 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2 fam1 dad granddad1 grandma1 1 1 fam1 mom granddad2 grandma2 2 2" with missing fields: [] 21:30:13.962 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.962 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.962 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.962 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.962 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.962 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.962 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.962 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.962 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.963 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.963 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.963 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.963 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.963 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.963 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.963 WARN PedReader - Reading PED string: "#comment fam1 s1 0 0 1 1 fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.963 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.964 WARN PedReader - Reading PED string: "#comment fam1 s1 0 0 1 1 fam2 s2 0 0 2 2 " with missing fields: [] 21:30:13.964 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.964 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad 0 0 1 1 fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.964 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.964 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.964 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.964 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.965 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.965 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad granddad1 grandma1 1 1 fam1 mom granddad2 grandma2 2 2" with missing fields: [] 21:30:13.965 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.965 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.965 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.965 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.966 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.966 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.966 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.966 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.966 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.966 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.967 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.967 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.967 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.967 WARN PedReader - Reading PED string: "#comment fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.967 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.967 WARN PedReader - Reading PED string: "#comment fam1 s1 0 0 1 1 fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.968 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.968 WARN PedReader - Reading PED string: "#comment fam1 s1 0 0 1 1 fam2 s2 0 0 2 2 " with missing fields: [] 21:30:13.968 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.968 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad 0 0 1 1 fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.968 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.968 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.969 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.969 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.969 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.969 WARN PedReader - Reading PED string: "#comment fam1 kid dad mom 1 2 fam1 dad granddad1 grandma1 1 1 fam1 mom granddad2 grandma2 2 2" with missing fields: [] 21:30:13.970 WARN PedReaderUnitTest - Test TestDataProvider(missingFam) 21:30:13.970 WARN PedReaderUnitTest - Test TestDataProvider(missingParents) 21:30:13.970 WARN PedReaderUnitTest - Test TestDataProvider(missingSex) 21:30:13.970 WARN PedReaderUnitTest - Test TestDataProvider(missingPhenotype) 21:30:13.970 WARN PedReaderUnitTest - Test TestDataProvider(missingEverythingButGender) 21:30:13.971 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.971 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.971 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.971 WARN PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.971 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.971 WARN PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.972 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.972 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.972 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.972 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.972 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.972 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.972 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.972 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.973 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.973 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.973 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.973 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2; ;" with missing fields: [] 21:30:13.973 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.973 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1;fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.973 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.973 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.974 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.974 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.974 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.974 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: [] 21:30:13.974 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.974 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.975 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.975 WARN PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.975 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.975 WARN PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.975 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.975 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.975 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.975 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.976 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.976 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.976 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.976 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.976 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.976 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.976 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.976 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2; ;" with missing fields: [] 21:30:13.977 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.977 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1;fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.977 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.977 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.977 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.977 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.977 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.977 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: [] 21:30:13.978 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMale) 21:30:13.978 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.978 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordFemale) 21:30:13.978 WARN PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: [] 21:30:13.978 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender) 21:30:13.978 WARN PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: [] 21:30:13.978 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordAffected) 21:30:13.978 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: [] 21:30:13.978 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected) 21:30:13.979 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: [] 21:30:13.979 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9) 21:30:13.979 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: [] 21:30:13.979 WARN PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0) 21:30:13.979 WARN PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: [] 21:30:13.979 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelated) 21:30:13.979 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: [] 21:30:13.979 WARN PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine) 21:30:13.979 WARN PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2; ;" with missing fields: [] 21:30:13.980 WARN PedReaderUnitTest - Test TestDataProvider(explicitTrio) 21:30:13.980 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1;fam1 mom 0 0 2 2" with missing fields: [] 21:30:13.980 WARN PedReaderUnitTest - Test TestDataProvider(implicitTrio) 21:30:13.980 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: [] 21:30:13.980 WARN PedReaderUnitTest - Test TestDataProvider(partialTrio) 21:30:13.980 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0 0 1 1" with missing fields: [] 21:30:13.980 WARN PedReaderUnitTest - Test TestDataProvider(bigPedigree) 21:30:13.980 WARN PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: []