Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

14

tests

0

failures

0

ignored

0.007s

duration

100%

successful

Tests

Test Duration Result
getFamilies 0.001s passed
getFamily 0s passed
getFamilyIDs 0s passed
loadAndMergeConsistentData 0.001s passed
loadDuplicateData 0.001s passed
loadFamilyIDs 0s passed
loadInconsistentData 0.001s passed
loadNonExistentFile 0s passed
loadPEDFile 0s passed
loadPEDString 0s passed
testAddSamplesFromSampleNames 0.001s passed
testGetFounderIds 0s passed
testGetTrios 0.001s passed
testGetTriosMultipleKids 0.001s passed

Standard error

21:30:13.982 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
21:30:13.983 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
21:30:13.984 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
21:30:13.984 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
21:30:13.985 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
21:30:13.986 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
21:30:13.987 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
21:30:13.988 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
21:30:13.989 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
21:30:13.989 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
21:30:13.990 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []