Class org.broadinstitute.hellbender.engine.spark.GATKSparkToolUnitTest

1

tests

0

failures

0

ignored

0.024s

duration

100%

successful

Tests

Test Duration Result
testGetDefaultToolVCFHeaderLines 0.024s passed

Standard error

22:03:40.584 INFO  TestGATKSparkToolWithVariants - ------------------------------------------------------------
22:03:40.584 INFO  TestGATKSparkToolWithVariants - The Genome Analysis Toolkit (GATK) v4.6.2.0-2-gfa08e16-SNAPSHOT
22:03:40.584 INFO  TestGATKSparkToolWithVariants - For support and documentation go to https://software.broadinstitute.org/gatk/
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Executing as root@f99bdcf77b66 on Linux v6.8.0-1021-azure amd64
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Start Date/Time: April 22, 2025 at 10:03:40 PM GMT
22:03:40.584 INFO  TestGATKSparkToolWithVariants - ------------------------------------------------------------
22:03:40.584 INFO  TestGATKSparkToolWithVariants - ------------------------------------------------------------
22:03:40.584 INFO  TestGATKSparkToolWithVariants - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:03:40.584 INFO  TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:03:40.584 INFO  TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:03:40.584 INFO  TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Deflater: IntelDeflater
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Inflater: IntelInflater
22:03:40.584 INFO  TestGATKSparkToolWithVariants - GCS max retries/reopens: 20
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Requester pays: disabled
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Initializing engine
22:03:40.584 INFO  TestGATKSparkToolWithVariants - Done initializing engine
22:03:40.585 INFO  TestGATKSparkToolWithVariants - Spark verbosity set to INFO (see --spark-verbosity argument)
22:03:40.586 INFO  TestGATKSparkToolWithVariants - Shutting down engine
[April 22, 2025 at 10:03:40 PM GMT] org.broadinstitute.hellbender.engine.spark.GATKSparkToolUnitTest$TestGATKSparkToolWithVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=910163968