| Test |
Duration |
Result |
| testAnalyzeTableMultipleReferences[0](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@6b21a869, {REFERENCE PAIR: hg19mini.fasta, hg19mini_1renamed.fasta
Status:
DIFFER_IN_SEQUENCE_NAMES
=[DIFFER_IN_SEQUENCE_NAMES], REFERENCE PAIR: hg19mini.fasta, hg19mini_chr2snp.fasta
Status:
DIFFER_IN_SEQUENCE
=[DIFFER_IN_SEQUENCE], REFERENCE PAIR: hg19mini_1renamed.fasta, hg19mini_chr2snp.fasta
Status:
DIFFER_IN_SEQUENCE_NAMES
DIFFER_IN_SEQUENCE
=[DIFFER_IN_SEQUENCE_NAMES, DIFFER_IN_SEQUENCE]}) |
0s |
passed |
| testAnalyzeTableTwoReferences[0](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@6edbdbed, [DIFFER_IN_SEQUENCE]) |
0s |
passed |
| testAnalyzeTableTwoReferences[1](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@539c833d, [DIFFER_IN_SEQUENCE_NAMES]) |
0s |
passed |
| testAnalyzeTableTwoReferences[2](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@4fbdd61f, [SUPERSET]) |
0s |
passed |
| testAnalyzeTableTwoReferences[3](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@3833a045, [SUBSET]) |
0s |
passed |
| testAnalyzeTableTwoReferences[4](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@2d579733, [DIFFER_IN_SEQUENCES_PRESENT]) |
0s |
passed |
| testAnalyzeTableTwoReferences[5](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@d388775, [EXACT_MATCH]) |
0s |
passed |
| testAnalyzeTableTwoReferences[6](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@4dc1f629, [DIFFER_IN_SEQUENCES_PRESENT, DIFFER_IN_SEQUENCE]) |
0s |
passed |
| testAnalyzeTableTwoReferences[7](org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@4d33713a, [DIFFER_IN_SEQUENCE_NAMES]) |
0s |
passed |
| testGenerateReferencePairsAgainstDictionary[0]([src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr2snp.fasta], src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withmd5s.bam, 2) |
0.002s |
passed |
| testGenerateReferencePairsAgainstDictionary[1]([src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr2snp.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_1renamed.fasta], src/test/resources/org/broadinstitute/hellbender/tools/reference/CheckReferenceCompatibility/reads_data_source_test1_withmd5s.bam, 3) |
0.002s |
passed |
| testGenerateReferencePairs[0]([src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr2snp.fasta], 1) |
0s |
passed |
| testGenerateReferencePairs[1]([src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr2snp.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_1renamed.fasta], 3) |
0.001s |
passed |
| testQueryByMD5[0](8c0c38e352d8f3309eabe4845456f274, 16000, org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@4a74e70d) |
0s |
passed |
| testQueryByMD5[1](8c0c38e352d8f3309eabe4845456f274, 16000, org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@4fd43b14) |
0s |
passed |
| testQueryBySequenceName[0](2, 2, org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@36bcae97) |
0s |
passed |
| testQueryBySequenceName[1](1, 1, org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@3030a20) |
0s |
passed |
| testQueryBySequenceName[2](5, 0, org.broadinstitute.hellbender.tools.reference.ReferenceSequenceTable@6086ba82) |
0s |
passed |