Class org.broadinstitute.hellbender.tools.spark.transforms.markduplicates.MarkDuplicatesSparkUnitTest

all > org.broadinstitute.hellbender.tools.spark.transforms.markduplicates > MarkDuplicatesSparkUnitTest
3

tests
0

failures
0

ignored
4.013s

duration
100%

successful

Tests

Test Duration Result
markDupesTest[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.unmarkedDups.noDups.bam, 20, 0) 2.878s passed
markDupesTest[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.unmarkedDups.bam, 90, 6) 0.644s passed
markDupesTest[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/MarkDuplicatesGATK/example.chr1.1-1K.markedDups.bam, 90, 6) 0.491s passed

Standard error

22:11:08.803 WARN  SparkContextFactory - Environment variables HELLBENDER_TEST_PROJECT and HELLBENDER_JSON_SERVICE_ACCOUNT_KEY must be set or the GCS hadoop connector will not be configured properly
22:11:09.220 WARN  NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable