Class org.broadinstitute.hellbender.tools.walkers.annotator.VariantOverlapAnnotatorUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > VariantOverlapAnnotatorUnitTest

193

tests

failures

ignored

0.646s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testAnnotateOverlapsEmpty[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlapsEmpty[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0s	passed
testAnnotateOverlapsEmpty[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlapsEmpty[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlapsEmpty[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlapsEmpty[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlapsEmpty[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0s	passed
testAnnotateOverlapsEmpty[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlapsEmpty[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlapsEmpty[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.001s	passed
testAnnotateOverlapsEmpty[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlapsEmpty[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlapsEmpty[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlapsEmpty[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlapsEmpty[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlapsEmpty[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0s	passed
testAnnotateOverlapsEmpty[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0s	passed
testAnnotateOverlapsEmpty[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0s	passed
testAnnotateOverlapsEmpty[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlapsEmpty[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0s	passed
testAnnotateOverlapsEmpty[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlapsEmpty[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0s	passed
testAnnotateOverlapsEmpty[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlapsEmpty[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlapsFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.007s	passed
testAnnotateOverlapsFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.009s	passed
testAnnotateOverlapsFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.005s	passed
testAnnotateOverlapsFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testAnnotateOverlapsFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.016s	passed
testAnnotateOverlapsFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testAnnotateOverlapsFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0.012s	passed
testAnnotateOverlapsFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testAnnotateOverlapsFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.005s	passed
testAnnotateOverlapsFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.005s	passed
testAnnotateOverlapsFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0.008s	passed
testAnnotateOverlapsFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0.009s	passed
testAnnotateOverlapsFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.007s	passed
testAnnotateOverlapsFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0.008s	passed
testAnnotateOverlapsFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.007s	passed
testAnnotateOverlapsFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.009s	passed
testAnnotateOverlapsFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.006s	passed
testAnnotateOverlapsFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.006s	passed
testAnnotateOverlaps[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlaps[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0s	passed
testAnnotateOverlaps[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlaps[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlaps[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlaps[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlaps[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.001s	passed
testAnnotateOverlaps[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlaps[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateOverlaps[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.001s	passed
testAnnotateOverlaps[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testAnnotateOverlaps[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateOverlaps[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlaps[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.001s	passed
testAnnotateOverlaps[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.003s	passed
testAnnotateOverlaps[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0s	passed
testAnnotateOverlaps[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0s	passed
testAnnotateOverlaps[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0s	passed
testAnnotateOverlaps[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateOverlaps[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0s	passed
testAnnotateOverlaps[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateOverlaps[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.001s	passed
testAnnotateOverlaps[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.003s	passed
testAnnotateOverlaps[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateRsID[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateRsID[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0s	passed
testAnnotateRsID[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateRsID[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateRsID[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateRsID[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateRsID[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.001s	passed
testAnnotateRsID[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateRsID[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testAnnotateRsID[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0s	passed
testAnnotateRsID[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.001s	passed
testAnnotateRsID[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateRsID[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateRsID[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateRsID[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateRsID[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.001s	passed
testAnnotateRsID[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0s	passed
testAnnotateRsID[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0s	passed
testAnnotateRsID[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateRsID[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0s	passed
testAnnotateRsID[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0s	passed
testAnnotateRsID[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0s	passed
testAnnotateRsID[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0s	passed
testAnnotateRsID[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0s	passed
testCreateWithSpecialNames	0s	passed
testRsIDFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testRsIDFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.005s	passed
testRsIDFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.008s	passed
testRsIDFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.003s	passed
testRsIDFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.003s	passed
testRsIDFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0.005s	passed
testRsIDFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0.004s	passed
testRsIDFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0.004s	passed
testRsIDFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.004s	passed
testRsIDFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testRsIDFeatureContextWithNoDBSnP[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testRsIDFeatureContextWithNoDBSnP[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testRsIDFeatureContextWithNoDBSnP[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.003s	passed
testRsIDFeatureContextWithNoDBSnP[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.005s	passed
testRsIDFeatureContextWithNoDBSnP[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContextWithNoDBSnP[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.006s	passed
testRsIDFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.004s	passed
testRsIDFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testRsIDFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testRsIDFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.004s	passed
testRsIDFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], rsID1;rsID3, true)	0.005s	passed
testRsIDFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, G] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed
testRsIDFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true)	0.004s	passed
testRsIDFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], ., false)	0.005s	passed
testRsIDFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTCC] attr={} GT=[] filters=], rsID1, true)	0.004s	passed
testRsIDFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.004s	passed
testRsIDFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false)	0.005s	passed
testRsIDFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=FAIL], ., false)	0.004s	passed
testRsIDFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], foo;rsID1, true)	0.006s	passed
testRsIDFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], foo, false)	0.005s	passed
testRsIDFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testRsIDFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID1, false)	0.005s	passed
testRsIDFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C] attr={} GT=[] filters=], rsID1, true)	0.005s	passed
testRsIDFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, T] attr={} GT=[] filters=], rsID2, true)	0.005s	passed
testRsIDFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, G] attr={} GT=[] filters=], ., false)	0.005s	passed
testRsIDFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A, C, T] attr={} GT=[] filters=], rsID1;rsID2, true)	0.005s	passed

Standard error

22:11:37.472 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
22:11:37.472 DEBUG GenomeLocParser -  1 (16000 bp)
22:11:37.472 DEBUG GenomeLocParser -  2 (16000 bp)
22:11:37.472 DEBUG GenomeLocParser -  3 (16000 bp)
22:11:37.472 DEBUG GenomeLocParser -  4 (16000 bp)
22:11:37.473 DEBUG BlockManagerStorageEndpoint - removing shuffle 10
22:11:37.473 DEBUG ContextCleaner - Cleaned shuffle 10
22:11:37.473 DEBUG ContextCleaner - Got cleaning task CleanBroadcast(39)
22:11:37.474 DEBUG ContextCleaner - Cleaning broadcast 39
22:11:37.474 DEBUG TorrentBroadcast - Unpersisting TorrentBroadcast 39
22:11:37.480 DEBUG BlockManagerStorageEndpoint - removing broadcast 39
22:11:37.480 DEBUG BlockManager - Removing broadcast 39
22:11:37.480 DEBUG BlockManager - Removing block broadcast_39_piece0
22:11:37.480 DEBUG MemoryStore - Block broadcast_39_piece0 of size 56 dropped from memory (free 2013265572)
22:11:37.480 DEBUG BlockManagerMasterEndpoint - Updating block info on master broadcast_39_piece0 for BlockManagerId(driver, localhost, 44777, None)
22:11:37.480 INFO  BlockManagerInfo - Removed broadcast_39_piece0 on localhost:44777 in memory (size: 56.0 B, free: 1920.0 MiB)
22:11:37.480 DEBUG BlockManagerMaster - Updated info of block broadcast_39_piece0
22:11:37.480 DEBUG BlockManager - Told master about block broadcast_39_piece0
22:11:37.480 DEBUG BlockManager - Removing block broadcast_39
22:11:37.480 DEBUG MemoryStore - Block broadcast_39 of size 136 dropped from memory (free 2013265708)
22:11:37.480 DEBUG BlockManagerStorageEndpoint - Done removing broadcast 39, response is 0
22:11:37.481 DEBUG BlockManagerStorageEndpoint - Sent response: 0 to localhost:33085
22:11:37.483 DEBUG ContextCleaner - Cleaned broadcast 39
22:11:37.483 DEBUG ContextCleaner - Got cleaning task CleanBroadcast(40)
22:11:37.483 DEBUG ContextCleaner - Cleaning broadcast 40
22:11:37.483 DEBUG TorrentBroadcast - Unpersisting TorrentBroadcast 40
22:11:37.485 DEBUG BlockManagerStorageEndpoint - removing broadcast 40
22:11:37.485 DEBUG BlockManager - Removing broadcast 40
22:11:37.485 DEBUG BlockManager - Removing block broadcast_40
22:11:37.485 DEBUG MemoryStore - Block broadcast_40 of size 144 dropped from memory (free 2013265852)
22:11:37.485 DEBUG BlockManager - Removing block broadcast_40_piece0
22:11:37.485 DEBUG MemoryStore - Block broadcast_40_piece0 of size 68 dropped from memory (free 2013265920)
22:11:37.485 DEBUG BlockManagerMasterEndpoint - Updating block info on master broadcast_40_piece0 for BlockManagerId(driver, localhost, 44777, None)
22:11:37.485 INFO  BlockManagerInfo - Removed broadcast_40_piece0 on localhost:44777 in memory (size: 68.0 B, free: 1920.0 MiB)
22:11:37.485 DEBUG BlockManagerMaster - Updated info of block broadcast_40_piece0
22:11:37.485 DEBUG BlockManager - Told master about block broadcast_40_piece0
22:11:37.485 DEBUG BlockManagerStorageEndpoint - Done removing shuffle 15, response is true
22:11:37.486 DEBUG BlockManagerStorageEndpoint - Sent response: true to localhost:33085
22:11:37.486 DEBUG BlockManagerStorageEndpoint - Done removing broadcast 40, response is 0
22:11:37.486 DEBUG BlockManagerStorageEndpoint - Sent response: 0 to localhost:33085
22:11:37.486 DEBUG ContextCleaner - Cleaned broadcast 40
22:11:37.486 DEBUG ContextCleaner - Got cleaning task CleanShuffle(16)
22:11:37.486 DEBUG ContextCleaner - Cleaning shuffle 16
22:11:37.487 DEBUG ContextCleaner - Cleaned shuffle 16
22:11:37.487 DEBUG BlockManagerStorageEndpoint - removing shuffle 16
22:11:37.504 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.510 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.519 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.519 DEBUG BlockManagerStorageEndpoint - Done removing shuffle 10, response is true
22:11:37.519 DEBUG BlockManagerStorageEndpoint - Sent response: true to localhost:33085
22:11:37.521 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.525 DEBUG BlockManagerStorageEndpoint - Done removing shuffle 16, response is true
22:11:37.525 DEBUG BlockManagerStorageEndpoint - Sent response: true to localhost:33085
22:11:37.528 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.531 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.537 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.540 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.544 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.546 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.550 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.556 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.559 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.562 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.566 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.571 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.575 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.577 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.581 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.583 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.587 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.589 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.593 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.595 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.599 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.601 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.604 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.607 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.611 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.613 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.617 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.619 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.624 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.626 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.630 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.632 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.636 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.639 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.642 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.645 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.649 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.651 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.654 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.657 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.660 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.662 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.665 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.668 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.672 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.674 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.678 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.680 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.683 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.686 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.689 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.691 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.695 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.697 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.700 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.703 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.706 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.708 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.711 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.714 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.717 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.719 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.722 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.725 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.728 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.730 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.733 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.735 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.738 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.740 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.744 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.747 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.750 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.752 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.756 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.758 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.761 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.764 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.767 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.769 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.772 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.775 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.778 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.780 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.783 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.786 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.789 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.792 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.795 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.802 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.805 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.807 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.817 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.819 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.822 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.825 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.828 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.830 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.833 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.836 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.839 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.841 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.844 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.846 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.849 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.851 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.854 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.856 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.858 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.861 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.864 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.865 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.868 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.870 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.873 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.875 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.877 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.879 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.882 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.884 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.886 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.888 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.891 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.893 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.895 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.897 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.900 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.901 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.904 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.906 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.908 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.910 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.913 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.915 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.917 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.919 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.922 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.923 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.926 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.928 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.931 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.933 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.935 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.937 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.940 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.942 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.944 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.946 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.948 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.950 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.953 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.955 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.957 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.959 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.962 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.964 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.966 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.968 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.971 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.973 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.976 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.978 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.980 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.982 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.984 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.986 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.988 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.990 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.993 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:37.994 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.000 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.002 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.005 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.006 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.009 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.010 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.013 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.014 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.017 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.018 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.021 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.022 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.025 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.026 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.029 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.030 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.033 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.034 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.037 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.039 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.041 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.043 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.045 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.047 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.049 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.051 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.053 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.055 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.057 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.059 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.061 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.063 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.066 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.068 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.070 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.072 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.074 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.076 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.078 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.080 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.082 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.084 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.086 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.088 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.090 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.092 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.095 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.097 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.100 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.101 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.103 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.105 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.107 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.109 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.111 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.113 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.115 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.117 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.119 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.121 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.124 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.126 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.128 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.130 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.132 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
22:11:38.134 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf