Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest

20

tests

0

failures

1

ignored

4.155s

duration

100%

successful

Tests

Test Duration Result
testConvertHeaderlessHadoopBamShardToBam 0.005s passed
testInvalidSort 1.405s passed
testPathExists - ignored
testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@c0a800) 0.493s passed
testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@5fa2d418) 0.061s passed
testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@32eb5b4d) 0.069s passed
testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@4d2bff0d) 0.070s passed
testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@5231a78b) 0.060s passed
testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@37973f47) 0.047s passed
testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@778fc7e) 0.054s passed
testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@f7a1b89) 0.054s passed
testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@57bf3478) 0.039s passed
testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@6b37b4dc) 0.040s passed
testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@5b2818ff) 0.049s passed
testReadsMustBeQueryGroupedToFixPartitions 0.001s passed
testReadsPairsSpanningMultiplePartitions 0.296s passed
testSortCoordinateSortMatchesHtsjdk 0.449s passed
testSortQuerynameFixesPartitionBoundaries 0.256s passed
testSortQuerynameSortMatchesHtsjdk 0.636s passed
testSortUsingElementsAsKeys 0.071s passed

Standard error

22:15:41.355 WARN  SparkContextFactory - Environment variables HELLBENDER_TEST_PROJECT and HELLBENDER_JSON_SERVICE_ACCOUNT_KEY must be set or the GCS hadoop connector will not be configured properly
22:15:41.808 WARN  NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable