Class org.broadinstitute.hellbender.cmdline.argumentcollections.IntervalArgumentCollectionUnitTest

all > org.broadinstitute.hellbender.cmdline.argumentcollections > IntervalArgumentCollectionUnitTest
48

tests
0

failures
0

ignored
0.098s

duration
100%

successful

Tests

Test Duration Result
emptyIntervalsTest[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@29aa29f5) 0.001s passed
emptyIntervalsTest[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@4e41b993) 0s passed
getUserSpecifiedIntervalsWithoutMerging[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@7108b12d) 0.076s passed
getUserSpecifiedIntervalsWithoutMerging[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@4a0161ee) 0s passed
testAllExcluded[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@18be7f57) 0.001s passed
testAllExcluded[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@2565b097) 0s passed
testExcludeWithNoIncludes[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@5fe80760) 0.001s passed
testExcludeWithNoIncludes[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@66859669) 0.001s passed
testExcludeWithPadding[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@7115d5af) 0.001s passed
testExcludeWithPadding[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@1006d0e3) 0.001s passed
testIncludeWithExclude[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@1fb4377d) 0.001s passed
testIncludeWithExclude[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@442e7215) 0.001s passed
testIncludeWithPadding[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@3b802baa) 0.001s passed
testIncludeWithPadding[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@27103726) 0s passed
testIntervalMergingRuleAdjacentMerge[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@1791670e) 0s passed
testIntervalMergingRuleAdjacentMerge[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@6bd2c51d) 0s passed
testIntervalMergingRuleAdjacentNoMerge[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@6ca9f1d0) 0s passed
testIntervalMergingRuleAdjacentNoMerge[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@3741a170) 0.001s passed
testIntervalMergingRuleOverlappingNoMergeWithPadding[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@4467088e) 0.001s passed
testIntervalMergingRuleOverlappingNoMergeWithPadding[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@7eb370c5) 0.001s passed
testIntervalMergingRuleOverlappingNoMerge[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@6c5e6da) 0s passed
testIntervalMergingRuleOverlappingNoMerge[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@45f20384) 0s passed
testIntervalSetAndMergingOverlap[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@29509774) 0.001s passed
testIntervalSetAndMergingOverlap[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@f61b92d) 0s passed
testIntervalSetRuleIntersection[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@670481b2) 0.001s passed
testIntervalSetRuleIntersection[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@465eb466) 0s passed
testIntervalSetRuleUnion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@1c8e4810) 0.001s passed
testIntervalSetRuleUnion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@4dfe14d4) 0s passed
testIntervalUnmergingWithIntervalPaddingOverlap[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@5ebd80f8) 0s passed
testIntervalUnmergingWithIntervalPaddingOverlap[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@1e82b631) 0.001s passed
testIntervalUnmergingWithUnmappedIntervalsAndPadding[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@627dfd9f) 0.001s passed
testIntervalUnmergingWithUnmappedIntervalsAndPadding[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@17179a7e) 0s passed
testIntervalsWithoutMergingWithNoIntervalsSpecified[0](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@5ce593bc) 0.001s passed
testIntervalsWithoutMergingWithNoIntervalsSpecified[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@70882cb7) 0s passed
testMultipleUnmappedInclusion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@1988e095) 0.001s passed
testMultipleUnmappedInclusion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@21c7415e) 0s passed
testNoIntersection[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@30407f28) 0s passed
testNoIntersection[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@367a245e) 0s passed
testOptionalIsOptional 0.001s passed
testRequiredIsRequired 0.001s passed
testThrowOnUnmappedExclusion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@21b508a0) 0s passed
testThrowOnUnmappedExclusion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@6dabad5c) 0s passed
testUnmappedAndMappedInclusionPlusMappedExclusion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@4d45b457) 0.001s passed
testUnmappedAndMappedInclusionPlusMappedExclusion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@71d3dfd5) 0s passed
testUnmappedAndMappedInclusion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@1203c259) 0s passed
testUnmappedAndMappedInclusion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@ba4c99c) 0s passed
testUnmappedInclusion[0](org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalIntervalArgumentCollection@15311af2) 0s passed
testUnmappedInclusion[1](org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredIntervalArgumentCollection@1626612d) 0s passed

Standard error

16:11:56.361 INFO  IntervalArgumentCollection - Processing 11 bp from intervals
16:11:56.362 INFO  IntervalArgumentCollection - Processing 11 bp from intervals
16:11:56.365 INFO  IntervalArgumentCollection - Initial include intervals span 64000 loci; exclude intervals span 48000 loci
16:11:56.365 INFO  IntervalArgumentCollection - Excluding 48000 loci from original intervals (75.00% reduction)
16:11:56.365 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:11:56.366 INFO  IntervalArgumentCollection - Initial include intervals span 64000 loci; exclude intervals span 48000 loci
16:11:56.366 INFO  IntervalArgumentCollection - Excluding 48000 loci from original intervals (75.00% reduction)
16:11:56.366 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:11:56.368 INFO  IntervalArgumentCollection - Initial include intervals span 100 loci; exclude intervals span 31 loci
16:11:56.368 INFO  IntervalArgumentCollection - Excluding 21 loci from original intervals (21.00% reduction)
16:11:56.368 INFO  IntervalArgumentCollection - Processing 79 bp from intervals
16:11:56.369 INFO  IntervalArgumentCollection - Initial include intervals span 100 loci; exclude intervals span 31 loci
16:11:56.369 INFO  IntervalArgumentCollection - Excluding 21 loci from original intervals (21.00% reduction)
16:11:56.369 INFO  IntervalArgumentCollection - Processing 79 bp from intervals
16:11:56.370 INFO  IntervalArgumentCollection - Initial include intervals span 100 loci; exclude intervals span 111 loci
16:11:56.370 INFO  IntervalArgumentCollection - Excluding 11 loci from original intervals (11.00% reduction)
16:11:56.370 INFO  IntervalArgumentCollection - Processing 89 bp from intervals
16:11:56.371 INFO  IntervalArgumentCollection - Initial include intervals span 100 loci; exclude intervals span 111 loci
16:11:56.371 INFO  IntervalArgumentCollection - Excluding 11 loci from original intervals (11.00% reduction)
16:11:56.371 INFO  IntervalArgumentCollection - Processing 89 bp from intervals
16:11:56.372 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
16:11:56.372 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
16:11:56.373 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.373 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.374 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.374 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.380 INFO  IntervalArgumentCollection - Processing 11 bp from intervals
16:11:56.380 INFO  IntervalArgumentCollection - Processing 11 bp from intervals
16:11:56.381 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.381 INFO  IntervalArgumentCollection - Processing 200 bp from intervals
16:11:56.385 INFO  IntervalArgumentCollection - Processing 12 bp from intervals
16:11:56.386 INFO  IntervalArgumentCollection - Processing 12 bp from intervals
16:11:56.390 INFO  IntervalArgumentCollection - Processing 17 bp from intervals
16:11:56.391 INFO  IntervalArgumentCollection - Processing 17 bp from intervals
16:11:56.392 INFO  IntervalArgumentCollection - Initial include intervals span 17 loci; exclude intervals span 16000 loci
16:11:56.392 INFO  IntervalArgumentCollection - Excluding 11 loci from original intervals (64.71% reduction)
16:11:56.392 INFO  IntervalArgumentCollection - Processing 6 bp from intervals
16:11:56.392 INFO  IntervalArgumentCollection - Initial include intervals span 17 loci; exclude intervals span 16000 loci
16:11:56.392 INFO  IntervalArgumentCollection - Excluding 11 loci from original intervals (64.71% reduction)
16:11:56.392 INFO  IntervalArgumentCollection - Processing 6 bp from intervals
16:11:56.393 INFO  IntervalArgumentCollection - Processing 1 bp from intervals
16:11:56.393 INFO  IntervalArgumentCollection - Processing 1 bp from intervals