Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

all > org.broadinstitute.hellbender.utils.samples > SampleDBUnitTest
14

tests
0

failures
0

ignored
0.002s

duration
100%

successful

Tests

Test Duration Result
getFamilies 0s passed
getFamily 0s passed
getFamilyIDs 0s passed
loadAndMergeConsistentData 0s passed
loadDuplicateData 0s passed
loadFamilyIDs 0s passed
loadInconsistentData 0s passed
loadNonExistentFile 0.001s passed
loadPEDFile 0s passed
loadPEDString 0s passed
testAddSamplesFromSampleNames 0s passed
testGetFounderIds 0s passed
testGetTrios 0.001s passed
testGetTriosMultipleKids 0s passed

Standard error

16:23:54.058 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
16:23:54.059 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
16:23:54.059 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
16:23:54.060 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
16:23:54.060 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
16:23:54.061 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
16:23:54.062 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
16:23:54.064 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
16:23:54.065 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
16:23:54.065 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
16:23:54.066 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []